BAC Information

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BAC

Clone NameMSMg01-511A16
Chromosome18 (Build37)
Map Location 60,133,905 - 60,134,473
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamts19, A730017C20Rik, 4833446K15Rik, LOC667549
Downstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511A16.T7 (MSMg01no511_a16.b1)MSMg01-511A16.TJ (MSMg01no511_a16.g1)
ACCAG584332AG584333
length719745
length of high quality
(start - end)
569 (71 - 639)446 (77 - 522)
definitionCHROMAT_FILE: MSMg01no511_a16.b1 PHD_FILE: MSMg01no511_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:47 2005CHROMAT_FILE: MSMg01no511_a16.g1 PHD_FILE: MSMg01no511_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGG
AATTCAGTGCCTTTCCCACAGTTGAGGGGATGTATAGCTGGTTTGCAAAG
GCAACATAAGCTTCTCTCTCACCTGAAGGAAATCAAGAGATGCTTTGCTG
GTTAGAAATCCCTGTGAACTCTAAGGATGCTCAGTTTAAGGGTGTGATTT
GGGGCAGAGAGGCAGTTGTGAGCAAGATTCCAAGGTGTATTAGCAAACAG
CCCTTGTCAGTCGGCATTGATCATGTGAAGGAAGACTGTATTAAGAGTAG
AATGGTTTGGGGATGTCGTTACTGCTGCTGTTTGTTTGTCTGTTTGTTTG
TTTGTTGTTTTTTTAAGGAAAGTGTAGGATGAGAGTTTGGAAGTGATTCT
CGGAAGCCTAGAATCATGACCTTCCCTCCCAAAGCTGGTATGACTGACTC
TAGAGGGATACACAGCATTCACTCTAAAACCAAGAAGGATAACAGTCCAC
AGGCAGAAGCAAGGTTCTGTTAAAGTACTTATGGAGCAAAGTACTTCTAC
ACTTCTACAAAGTGGTGATGGAATTACTTAGTGCAGATAAAAGCCTGAGA
ACACTTTGCAGATGGGGGAAAACCATATGAGATAAGAATTATTAAGGGAT
TCTCAGGAGTAGCATCCATCAGGAGTACTTTACAGGAACCTGAGGGACTC
CACCGGTGGCCTGTAACCC
TCAATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGAGTTTTTAATTTATGTCTTTC
TTTCTTTTAGACTCATTTTTCATTCAATATAGAGTTATTCAGTTTCCATG
AGTTTGTAAGCTTTCTGTTGCTATTTACATCTAGCTTAATATGTGGTTGT
CTGATAGGATGCAGGGAGTTATTTCAGTTTTCTTGAAACTTGCATTGTGT
CTGAATATGTGGCCAATTTTAGGGAATGTTGCATGAGATACAGAGAAAAA
TATATATTCCATTGTGCTTTGGTGAAATGCCCTGTAAATATCTGTTGGTT
AGCTTTGGTTTATAATGTCTGTTAACTCTAGTATTTCTGTTTAGTTTTTG
TCTGGATGATCTGTCTATTGGTATGAGTGAGGTATTGAAGTTTTAGTGTG
CTAATGTGAATATGTAATTTAAGCTATAGTATAGTTTCTTTTACAAACTT
GGGTACACTTATGTTTGGGACAGATTTTAAGAACTGATATAATATCTTGG
TAGATTTTTACCTTTATGAATATATAGCGGCCTTTTCTATCTCTTTCGAT
TGGTTCTGGTGTCGAGACCGCTCTGTTACATAAAAACGCTTTGCTTGCTT
CTCATTACCTTTGCTTGGTTTTCTTTTTCCCATTTTTTTTTTTTCGTTTT
GCTTATTTTCGATGTTTCGATTGCCTCTTGGACTTATATTAGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_a16.b1 MSMg01no511_a16.b1 CHROMAT_FILE:
MSMg01no511_a16.b1 PHD_FILE: MSMg01no511_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:47 2005
         (569 letters)



>mm_chr18_60133705_60134673
          Length = 969

 Score =  994 bits (514), Expect = 0.0
 Identities = 556/570 (97%), Gaps = 2/570 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgaggggatgtatagctggtttgcaaaggcaacataagcttctctctcacctgaagga 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttgaggggatgtacagctggtttgcaaaggcaacataagcttctctctcacctgaagga 260

                                                                       
Query: 61  aatcaagagatgctttgctggttagaaatccctgtgaactctaaggatgctcagtttaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcaagagatgctttgctggttagaaatccctgtgaactctaaggatgctcagtttaag 320

                                                                       
Query: 121 ggtgtgatttggggcagagaggcagttgtgagcaagattccaaggtgtattagcaaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 ggtgtgatttggggcagagaggcagttgtgagcaagattccaaggtgcattagcaaacag 380

                                                                       
Query: 181 cccttgtcagtcggcattgatcatgtgaaggaagactgtat-taagagtagaatggtttg 239
           ||||||||||||  ||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 381 cccttgtcagtcaacattgatcatgtgaaggaagactgtatcta-gagtagaatggtttg 439

                                                                       
Query: 240 gggatgtcgttactgctgctgtttgtttgtctgtttgtttgtttgttgtttttttaagga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gggatgtcgttactgctgctgtttgtttgtctgtttgtttgtttgttgtttttttaagga 499

                                                                       
Query: 300 aagtgtaggatgagagtttggaagtgattctcggaagcctagaatcatgaccttccctcc 359
           ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 500 aagtggaggatgagagtttggaagtgattctcagaagcctagaatcatgaccttccctcc 559

                                                                       
Query: 360 caaagctggtatgactgactctagagggatacacagcattcactctaaaaccaagaagga 419
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 560 caaagctggtatgactgactctagagggatacacagcattcactcgaaaaccaagaaaga 619

                                                                       
Query: 420 taacagtccacaggcagaagcaaggttctgttaaagtacttatggagcaaagtacttcta 479
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaacagtccacagacagaagcaaggttctgttaaagtacttatggagcaaagtacttcta 679

                                                                       
Query: 480 cacttctacaaagtggtgatggaattacttagtgcagataaaagcctgagaacactttgc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 680 cacttctacaaagtggtgatggaattacttagtgcagataaaagcctgagaacactttgg 739

                                         
Query: 540 agatgggggaaaaccatatgagataagaat 569
           |||||||||||||||||| |||||||||||
Sbjct: 740 agatgggggaaaaccataggagataagaat 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)