BAC Information

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BAC

Clone NameMSMg01-511B02
Chromosome18 (Build37)
Map Location 10,169,865 - 10,170,098
singlet/doubletsinglet
Overlap geneRock1
Upstream geneFzd8, 9430022F06Rik, Ccny, LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155, Colec12, LOC665111, LOC100039787, EG433161, Thoc1, Usp14, LOC100039978
Downstream geneLOC635344, LOC435554, AK220484, LOC621832, Esco1, Snrpd1, LOC100039880, Abhd3, Mib1, LOC665296, 1010001N08Rik, Gata6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511B02.T7 (MSMg01no511_b02.b1)MSMg01-511B02.TJ (MSMg01no511_b02.g1)
ACCAG584352AG584353
length750721
length of high quality
(start - end)
239 (46 - 284)447 (76 - 522)
definitionCHROMAT_FILE: MSMg01no511_b02.b1 PHD_FILE: MSMg01no511_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:49 2005CHROMAT_FILE: MSMg01no511_b02.g1 PHD_FILE: MSMg01no511_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTATCCACTTCCCCTCCCCATTCAACAGTTCAGCTTTTTATATAG
TTATGGTATTGGGCAAATTATCTAACTTATTTAGATAATTTTATCTATAT
ACCTAAAGGTACGTAGTTTGTAAACTTAAGGATCATAATACTTTCTAGGT
TTTAATTATGCAGATGAAATAAACTGGTGGTCAACATTTACTTTTCTGTG
GTCTTTAGAGACCAGGCTAGGTCAGGGGTCACAGGNNAANNNNTTNNCTC
TTTTNNGNGGTCTTTGCGGGGGGGGCGGTGGGGCGCGGGGGGGGGGGGGT
GCCGGGGGGGGGGGGGGGGGGGGGTCCCCCCCCCCCCTTTTTCTTCTTCC
CTTTTGTCCCCCCTTTTCCCCTTCCGCCGCTTTTCCTCCNTTTTTTTTTT
TTTTTTTTCGGGCCCGGGTCCGGGGGGGGGGGGGGGGGGGGCTTTCTTTC
TTCTCGTTTTTTCTCTTTCCGCCCCGGGTGCGCGCCCGCGTTTGTGTGTT
TGTTGCCTTCCCCCCCGCCCTTTCCTTTTCTCTCCCTTCTCCTTTCTCCC
TCTCTTTTTTCCCGCCTTCTTTTCCCTTCCCCTTTTTCCCCTTTCTCTTT
TTTTTTTTTCCTCCTTCCCCCTGTTTGGTTCTTTCGCCGTTCTCGCGTTT
TTTCCCTCCCCCTTTCTGCCATTTCTTCCCGGCCCCCTTTTCCTTTCCCC

CTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCATGTTTACCAGCTTTGGTTTTGC
AAACCTTGTTCCTTGATTTAATTAAATTGGCTACAGCCAATTACTGGAGG
GATTAGAGGTAGGTGGGTTTTGAGTTACCTTGCTAGGGGTAGAAAAGAGA
AGGGAGTGAGGAGAGATCAGGTGGAGAAGGAGGAAGAAGAACAAGAGGAG
AGGAGGAAGCCACCATGAGGGGAGATAGACCATGAGCACATGGTCAGAAG
AAACAGCAAGATTATAGGGTACACTGCTAGGGAAGCAACCAGGTCAGCAA
TTAGAAAAGTAGATTAGGGGTGACCCCCAATAACTGTCAAAACCAAATAA
AATAACCATAGTCTGAGTCTTGTTTATTTGTAAACTATTCAGGGATAAGC
TTACATTTGTTATACTACACAAAGTGGCATACTGAAAATCTCTAATCACA
ACACACTTCACTTACCTCTCTACCAGAATTATCCTCTATGGCTTCTAGTT
TCTGTTGCAGGACTCTCATCATTTGTATCCAGCATTCGTTAGCATCCTGT
GATATAAAATGAGACAGGGTTTAATCTATAACACCCTTTTAATCTATTGT
TTCCTTAGGGAAGGAAGATTATTTCTTCTTTAAAATTACTCCAGCAGATC
TGGGTATGATGATGCACTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_b02.b1 MSMg01no511_b02.b1 CHROMAT_FILE:
MSMg01no511_b02.b1 PHD_FILE: MSMg01no511_b02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:49 2005
         (239 letters)



>mm_chr18_10169661_10170298
          Length = 638

 Score =  431 bits (223), Expect = e-125
 Identities = 232/235 (98%), Gaps = 1/235 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttatccacttcccctccccattcaacagttcagctttttatatagttatggtat 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gaattcttatccacctcccctccccattcaacagttcagctttttatatagttatggtat 379

                                                                       
Query: 65  tgggcaaattatctaacttatttagataattttatctatatacctaaaggtacgtagttt 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgggcaaattatttaacttatttagataattttatctatatacctaaaggtacgtagttt 319

                                                                       
Query: 125 gtaaacttaaggatcataatactttctaggttttaattatgcagatgaaataaactggtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 318 gtaaacttaaggatcataatactttctaggttttaattatgcagatgaaataaactggt- 260

                                                                  
Query: 185 gtcaacatttacttttctgtggtctttagagaccaggctaggtcaggggtcacag 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gtcaacatttacttttctgtggtctttagagaccaggctaggtcaggggtcacag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 638
Length adjustment: 9
Effective length of query: 230
Effective length of database: 629
Effective search space:   144670
Effective search space used:   144670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)