Query= MSMg01no511_j13.b1 MSMg01no511_j13.b1 CHROMAT_FILE:
MSMg01no511_j13.b1 PHD_FILE: MSMg01no511_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:30 2005
(209 letters)
>mm_chr18_51175935_51176543
Length = 609
Score = 383 bits (198), Expect = e-111
Identities = 207/212 (97%), Gaps = 4/212 (1%)
Strand = Plus / Minus
Query: 1 ttcaccgtaatcatagaatgagatgtaaaatgaaggtttgtgttctagtctcaagatttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttcaccgtaatcatagaatgagatgtaaaatgaaggtttgtgttctagtctcaagatttc 292
Query: 61 ccaatgccctcaatttttatctatagacagtccatctcttacatagttctaactttcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ccaatgccctcaatttttatctatagacagtccatctcttacatagttctaactttcaga 232
Query: 121 ctgcatgtgaggtgctagaagcacgattttctgtgtgtgtgtgtgtgtgtgtgtgtgtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ctgcatgtgaggtgctagaagcacgattttctgtgtgtgtgtgtgtgtgtgtgtgtgtgt 172
Query: 181 gtgt----gtgtatgtgtatagtgtggtgtgt 208
|||| |||||||||| |||||||||||||
Sbjct: 171 gtgtatgtgtgtatgtgtgtagtgtggtgtgt 140
Score = 60.7 bits (31), Expect = 7e-14
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 152 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 182
|||||||||||||||||||||||||||||||
Sbjct: 51 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 21
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 85
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 2
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space: 120000
Effective search space used: 120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no511_j13.g1 MSMg01no511_j13.g1 CHROMAT_FILE:
MSMg01no511_j13.g1 PHD_FILE: MSMg01no511_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:30 2005
(565 letters)
>mm_chr18_50993359_50994323
Length = 965
Score = 1085 bits (561), Expect = 0.0
Identities = 564/565 (99%)
Strand = Plus / Plus
Query: 1 ttttgtgagttttgtaagactttgtgagcctttggttttgcttgggtgataatgacactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgtgagttttgtaagactttgtgagcctttggttttgcttgggtgataatgacactt 260
Query: 61 aactttctaaagtattccagactctaaaaattgcaggaacaaaacctactggagaccata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactttctaaagtattccagactctaaaaattgcaggaacaaaacctactggagaccata 320
Query: 121 tggagacaagctccgcaagacatttgtgtggttggcatctgctcctatcagaactggcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggagacaagctccgcaagacatttgtgtggttggcatctgctcctatcagaactggcac 380
Query: 181 agaaactgacatctttgggtctctgattctttcagaccagggcttataggatggtttaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaactgacatctttgggtctctgattctttcagaccagggcttataggatggtttaat 440
Query: 241 catgggagtttattgaaaatgacttgccaagatctgaattgatgatttaattttttcaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgggagtttattgaaaatgacttgccaagatctgaattgatgatttaattttttcaaa 500
Query: 301 gaatattaagtgacaactcacactttggtttcatcacattgcagctggttcatgtctttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaatattaagtgacaactcacactttggtttcatcacattgcagctggttcatgtctttt 560
Query: 361 tcaggggcaaaagtttcaggacaagcacctgcaatgttgaatatctctcctgattcattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaggggcaaaagtttcaggacaagcacctgcaatgttgaatatctctcctgattcattt 620
Query: 421 cttcttgtctaacatgagctcaaaaatggggaataaatatagcctttagagatatcttaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttcttgtctaacatgagctcaaaaatggggaataaatatagcctttagagatatcttaa 680
Query: 481 cccttcaagagccagagggaaagttacatttctgaccagacctattcctttacatcatca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cccttcaagagccagagggaaagttacatttctgaccagacctattcctttacatcatca 740
Query: 541 acatgaaaggatagatagctccatc 565
||||||| |||||||||||||||||
Sbjct: 741 acatgaagggatagatagctccatc 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
