BAC Information

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BAC

Clone NameMSMg01-512E07
Chromosome18 (Build37)
Map Location 26,280,984 - 26,281,551
singlet/doubletsinglet
Overlap genenone
Upstream geneFhod3, 5730494M16Rik, AW554918, Brunol4, LOC100041241, LOC665916, LOC100041263, LOC100041274
Downstream geneEG665977
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512E07.T7 (MSMg01no512_e07.b1)MSMg01-512E07.TJ (MSMg01no512_e07.g1)
ACCAG585268AG585269
length737596
length of high quality
(start - end)
580 (67 - 646)---
definitionCHROMAT_FILE: MSMg01no512_e07.b1 PHD_FILE: MSMg01no512_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:22 2005CHROMAT_FILE: MSMg01no512_e07.g1 PHD_FILE: MSMg01no512_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATT
CATCGCCGATTTCAAACAATTTATTGGGTTGGTGGCCATGATATGCACAA
AAATTATCAACAGATTTAAATTTTTGTTTTTAATCACTTATTTCTGACAG
ACAGTGAAGTCCCAGAAAACATTTGACTTTATAGTCATCACCATCATCAT
CATTACTACTATCATCACCATCATCATTATTATTACTGTACCCATCACCA
TATCATTATTACTATTTTCACCATCATTGTTACCCATATGAGAAGAAGCT
CTGATATTTCTTTCCTGTGAGTGATGGGTAATGTCACTATTGGAAATATT
CACTTCCTTGCTCTCACATCAAACATTTCTCATCAGGTAGGTTTAAAAAT
AATTATGGTAAACTCTAATTTTATTACCCCGGAAATATATTAAAAATGTA
GATCTTTTATAATTCCTTCAATTAACTGTAGACACTTCTTGATTACTTTC
TAATTAAATCATTTCACTCTAAGACTTGGTAATTACAACAAGAAGTTATT
AAAATTAGAAAACATTTGCTAACTCAGTACTTTTGATTATTAAGCCTTTG
TCATTTAATATTGCTCAACACTCTATGAAGATATATGAGCCAAGAAACTG
ATTTTAATGTCTTTAGCTGAAATAATTAACTACAGGTGTCCCAGACATTG
AAGGCTTCTTTCTTAACACATATTTTCCTGTAAAATC
CTCCAACGTTTGAAGTACGCTCCTGCTCAATGCTAXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTTTTAGACTTTCACTCATCAAATGTGTGCAAGAAGCTCCACTGTGAAT
GGGGAAAGTAGATGCAACTGTCTAATGGATATGTGGGTGAAAAGGCAGGG
TCTGAAAATAACATCTCCTTTTTGAAACGGGGGGGACCCCCAGGGCGGGG
AGGGAACCAGTGGGAGCCCGGAAGGGCCCCCCAAAATTTTTACCCTGGGC
CCCTGGGCAAAAAAAAAACCCGGGGGTTTTTTAAAAAACCTTTTTTTTTA
TGGGGGTCCTCAAAATTCACTGGGTGCCCCCCTAGGGGGGGTTGGGGGGG
AGTTTCCTTTTTCGGGCCCCTCTCTTCTTTAGCGGGGGGGGGTGGCGCGT
CTCCCCCCCCCCCTTTTCGTGCGTTTACTCATTATTTTTCTTTTCCCCGA
AAATATGTGACCTCCCCCCCCTCGTGTGTTTGTAATAACCCACTTCTTTT
TTTCGTCCCTCGCCGCGTTTTTTTTTTTTTTTCTTTCCCTATCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_e07.b1 MSMg01no512_e07.b1 CHROMAT_FILE:
MSMg01no512_e07.b1 PHD_FILE: MSMg01no512_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:22 2005
         (580 letters)



>mm_chr18_26280573_26281551
          Length = 979

 Score = 1013 bits (524), Expect = 0.0
 Identities = 559/576 (97%), Gaps = 14/576 (2%)
 Strand = Plus / Minus

                                                                       
Query: 11  ggttggtggccatgatatgcacaaaa---attatcaacagatttaaatttttgtttttaa 67
           ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
Sbjct: 979 ggttggtggccatgatatgcacaaaaattattatcaacagatttaaatttttgtttttaa 920

                                                                       
Query: 68  tcacttatttctgacagacagtgaagtcccagaaaacatttgactttatagtcatcacca 127
           ||||||||||||    |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 919 tcacttatttct----gacagtgaagtcccagaaaacatttgactttatagtcatcgcca 864

                                                                       
Query: 128 tcatcatcattactactatcatcaccatcatcattattattactgtacccatcaccatat 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 tcatcatcattactactatcatcaccatcatcattattattactgtacccatcaccatat 804

                                                                       
Query: 188 cattattactattttcaccatcattgttacccatatgagaagaagctctgatattt--ct 245
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  | 
Sbjct: 803 cattattactattttcaccatcattgttacccagatgagaagaagctctgatatttcac- 745

                                                                       
Query: 246 ttcctgtgagtgatgggtaatgtcactattggaaatattcacttccttgctctcacatca 305
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 --cctgtgagtgatgggtaatgtcactattggaaatattcacttccttgctctcacatca 687

                                                                       
Query: 306 aacatttctcatcaggtaggtttaaaaataattatggtaaactctaattttattaccccg 365
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aacatttatcatcaggtaggtttaaaaataattatggtaaactctaattttattaccccg 627

                                                                       
Query: 366 gaaatatattaaaaatgtagatcttttataattccttcaattaactgtagacacttcttg 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gaaatatattaaaaatgtagatcttttataattccttcaattaactgtagacacttcttg 567

                                                                       
Query: 426 attactttctaattaaatcatttcactctaagacttggtaattacaacaagaagttatta 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 attactttctaattaaatcatttcactctaagacttggtaattacaacaagaagttatta 507

                                                                       
Query: 486 aaattagaaaacatttgctaactcagtacttttgattattaagcctttgtcatttaatat 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aaattagaaaacatttgctaactcagtacttttgattattaagcctttgtcatttaatat 447

                                               
Query: 546 tgctcaa-cactctatgaagatatatgagccaagaa 580
           ||| ||| ||||||||||||||||||||||||||||
Sbjct: 446 tgc-caaacactctatgaagatatatgagccaagaa 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 979
Length adjustment: 10
Effective length of query: 570
Effective length of database: 969
Effective search space:   552330
Effective search space used:   552330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)