BAC Information

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BAC

Clone NameMSMg01-512G18
Chromosome18 (Build37)
Map Location 41,558,223 - 41,699,265
singlet/doubletdoublet
Overlap genenone
Upstream geneKctd16, EG225416, LOC677182
Downstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512G18.T7 (MSMg01no512_g18.b1)MSMg01-512G18.TJ (MSMg01no512_g18.g1)
ACCAG585385AG585386
length780796
length of high quality
(start - end)		656 (33 - 688)530 (65 - 594)
definitionCHROMAT_FILE: MSMg01no512_g18.b1 PHD_FILE: MSMg01no512_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:34 2005CHROMAT_FILE: MSMg01no512_g18.g1 PHD_FILE: MSMg01no512_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,698,693 - 41,699,265)(41,558,223 - 41,558,752)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGAATGTC
ATGGGGAGCAAGTTTGCAATGGCAGATGTATACATTCTTTCTTGCCAGTT
GGGTGTGACTTACTGTGTAGGAGTGAATTAGAATTGAGGTATGGGGGTTG
CATTTAGGTATCTGTCCTGAAATTTGAAATCTTAGACTGAACTATCACTT
TGACCCACTTAACTGGAAAAATATTAGTTTCTGGGAAATCACTGTATCTG
TTCCTAAAATGTTTTATTTTAGGCTCTCAAGAGACACTGCAGCCTTAGAT
AATTGTTTTACCGAGTGGCGTAGTATTTAAATGAAAGAGAAATCAAATTA
TGGAGTCTCACTGTTTAGACAATTGGATTTTTCCATTGCTGTAGCCATTC
ATTTTATATACACACGCATATACATATATGAATAAGTATACATGTAAATA
TATGTAACACAGCATACTCAATAATTTGATTTTAACAACTAGTATATTAT
TTAATTTCATATTAATTTTATTAATATTTCCATGTTGTAAACCATAGGCA
CAATTGATGCTTTAAATTGTGTCACCAAGACACTTTTCTGTTTTTTGTTT
TTTTGTTTGTTTGTTTGTTTTTGGTTTTTGGTTTTTTGAGACAGGGTTTC
TCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCC
TCGAACTCAGAAATTCGACTGCCTCTGCCTCCAAGCACTGGGAATAAAGG
CGTGCAACACCATGCCCGGCACCAAGAAAN

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTATTTAAAGTTCCAGCCATGTCTTGGCTAAGCTAC
TAAGAAGCAAGATAAGAATTCTTTTTCAAAGCTTAGACAAATAATTTCTG
TAGTACCTATGTTTCCAAAAGGCCAACAAGGTGATTCTATTGATATGAAT
GGAATGAAAATGCTAGGGAATGCCAGCTTCTGGGATAAAAGCACAAGTCT
ATGAAGTGGCCAATAATCCCCACATTGCAGAACTGCCTTCCTTTACTAAA
ACATGGAGCATCTGATATCACACAGCAAAGAAGTTCATTAGGCTGCATAA
AGAATGAGAGATGATGGCAATGAGGTGGCTCGGTGGGTGACAATGTTTGT
CACCAAACTAGATGACTAGAATTTCTTGAATGGTGTCACCCAGAGCATTT
GCCTCCTACTTCTGGATTTCATCTGAAGGAATGCAGAGTTGTCAGTTTGG
AAACCAATCCCATCAGTGATTTAAAGTGTTTATCCCTAATATCATTTTGG
TGTCTAAAGCAGAGTGTGACTCTGGGTGATAAGCATGCCACCAGACTGCA
GGTGTCAGAAGACAAAGTGTCTCAACATTCTCCCTGAGCAATGTTTTATG
TTTATTGCGCTGCAAATGTGTGTGAATTATGCACCACTACTGTTTTGTCA
ATACCACTTTCGTCACTGCCAAAAGCCAGTTTAATAAGCTCAGTTCATCA
GCTTTGGNCATTTCAACACTTCCTTTTCCAAAAGGGAATATAATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_g18.b1 MSMg01no512_g18.b1 CHROMAT_FILE:
MSMg01no512_g18.b1 PHD_FILE: MSMg01no512_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:34 2005
         (656 letters)



>mm_chr18_41698693_41699748
          Length = 1056

 Score = 1062 bits (549), Expect = 0.0
 Identities = 567/573 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgaatgtcatggggagcaagtttgcaatggcagatgtatacattctttcttgcc 64
           ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 573 gaattctgaatgtgatggggagcaagtttgcaatggcagatgtgtacattctttcttgcc 514

                                                                       
Query: 65  agttgggtgtgacttactgtgtaggagtgaattagaattgaggtatgggggttgcattta 124
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 513 agttgggtgtgacttactgtgcaggagtgaattagaattgaggtatgggggttgcattta 454

                                                                       
Query: 125 ggtatctgtcctgaaatttgaaatcttagactgaactatcactttgacccacttaactgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ggtatctgtcctgaaatttgaaatcttagactgaactatcactttgacccacttaactgg 394

                                                                       
Query: 185 aaaaatattagtttctgggaaatcactgtatctgttcctaaaatgttttattttaggctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aaaaatattagtttctgggaaatcactgtatctgttcctaaaatgttttattttaggctc 334

                                                                       
Query: 245 tcaagagacactgcagccttagataattgttttaccgagtggcgtagtatttaaatgaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tcaagagacactgcagccttagataattgttttaccgagtggcgtagtatttaaatgaaa 274

                                                                       
Query: 305 gagaaatcaaattatggagtctcactgtttagacaattggatttttccattgctgtagcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gagaaatcaaattatggagtctcactgtttagacaattggatttttccattgctgtagcc 214

                                                                       
Query: 365 attcattttatatacacacgcatatacatatatgaataagtatacatgtaaatatatgta 424
           ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 213 attcattttatatacacacacatacacatatatgaataagtatacatgtaaatatatgta 154

                                                                       
Query: 425 acacagcatactcaataatttgattttaacaactagtatattatttaatttcatattaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 acacagcatactcaataatttgattttaacaactagtatattatttaatttcatattaat 94

                                                                       
Query: 485 tttattaatatttccatgttgtaaaccataggcacaattgatgctttaaattgtgtcacc 544
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  ttgattaatatttccatgttgtaaaccataggcacaattgatgctttaaattgtgtcacc 34

                                            
Query: 545 aagacacttttctgttttttgtttttttgtttg 577
           |||||||||||||||||||||||||||||||||
Sbjct: 33  aagacacttttctgttttttgtttttttgtttg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no512_g18.g1 MSMg01no512_g18.g1 CHROMAT_FILE:
MSMg01no512_g18.g1 PHD_FILE: MSMg01no512_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:34 2005
         (530 letters)



>mm_chr18_41558023_41558952
          Length = 930

 Score =  986 bits (510), Expect = 0.0
 Identities = 525/530 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatttaaagttccagccatgtcttggctaagctactaagaagcaagataagaattcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ttatttaaagttccagccatgtcttggctaagctactaagaagcaagataaaaattcttt 260

                                                                       
Query: 61  ttcaaagcttagacaaataatttctgtagtacctatgtttccaaaaggccaacaaggtga 120
           |||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ttcaaaacttagacaaagaatttctgtagtacctgtgtttccaaaaggccaacaaggtga 320

                                                                       
Query: 121 ttctattgatatgaatggaatgaaaatgctagggaatgccagcttctgggataaaagcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctattgatatgaatggaatgaaaatgctagggaatgccagcttctgggataaaagcac 380

                                                                       
Query: 181 aagtctatgaagtggccaataatccccacattgcagaactgccttcctttactaaaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtctatgaagtggccaataatccccacattgcagaactgccttcctttactaaaacat 440

                                                                       
Query: 241 ggagcatctgatatcacacagcaaagaagttcattaggctgcataaagaatgagagatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagcatctgatatcacacagcaaagaagttcattaggctgcataaagaatgagagatga 500

                                                                       
Query: 301 tggcaatgaggtggctcggtgggtgacaatgtttgtcaccaaactagatgactagaattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggcaatgaggtggctcggtgggtgacaatgtttgtcaccaaactagatgactagaattt 560

                                                                       
Query: 361 cttgaatggtgtcacccagagcatttgcctcctacttctggatttcatctgaaggaatgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgaatggtgtcacccagagcatttgcctcctacttctggatttcatctgaaggaatgc 620

                                                                       
Query: 421 agagttgtcagtttggaaaccaatcccatcagtgatttaaagtgtttatccctaatatca 480
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 agagttgtcagtttggaaaccaatcccaccagtgatttaaagtgtttatccctaatatca 680

                                                             
Query: 481 ttttggtgtctaaagcagagtgtgactctgggtgataagcatgccaccag 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttggtgtctaaagcagagtgtgactctgggtgataagcatgccaccag 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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