Query= MSMg01no512_i13.b1 MSMg01no512_i13.b1 CHROMAT_FILE:
MSMg01no512_i13.b1 PHD_FILE: MSMg01no512_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:43 2005
(678 letters)
>mm_chr18_68123099_68124176
Length = 1078
Score = 1241 bits (642), Expect = 0.0
Identities = 666/674 (98%)
Strand = Plus / Minus
Query: 5 gaattctctgtttctgatcaaatttccttcgttctcctgccctgccatagctcatactca 64
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 878 gaattctctgccactgatcaaatttccttcgttctcctgccctgccatagcccatactca 819
Query: 65 gctagcctggcagctaggagggccagggaatctgccctttaagtggcaattgattgactg 124
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 818 gctagcctggcagctaggagggccagggagtctgccctttaagtggcaattgattgactg 759
Query: 125 aagaaaacagatgcagtgcctcgctctcagaaggagaagcacccacgagctacaacccct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 aagaaaacagatgcagtgcctcgctctcagaaggagaagcacccacgagctacaacccct 699
Query: 185 tgcctcagcttcaatcaagctctttacaaaaacctgaccacagcctccaggtagtggcat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tgcctcagcttcaatcaagctctttacaaaaacctgaccacagcctccaggtagtggcat 639
Query: 245 cccgtaccatgatgagtcccaaaatcaagagtgctgagatgtatcggtatgtgcatccct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 cccgtaccatgatgagtcccaaaatcaagagtgctgagatgtatcggtatgtgcatccct 579
Query: 305 agattccagggacctcagagcagagtggtctcagcacaagctgatggagtgaagtgtcag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 agattccagggacctcagagcagagtggtctcagcacaagctgatggagtgaagtgtcag 519
Query: 365 aaatggctacagactatccaaacctccacaggctaccattaactctgcagtgaatgctta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aaatggctacagactatccaaacctccacaggctaccattaactctgcagtgaatgctta 459
Query: 425 gtcgtggattctggcaatgtgggctatctgattttaccattcattgttcaagcactttaa 484
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 458 gtcgtggattctggcaatgtgggctatctgattttaccattcatttttcaagcactttaa 399
Query: 485 ttagcctctcaaaacacagggacccaaccttcatgccaatttctgttcacacactgaatc 544
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 398 ttagcctctcaaaacacagggacccaaccttcatgccaatctctgttcacacactgaatc 339
Query: 545 ggtttttaacaaggcatttttaatttgctcttgagcatccactcttacatctgtcagtgc 604
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ggtttttaacaaagcatttttaatttgctcttgagcatccactcttacatctgtcagtgc 279
Query: 605 ctgccttgtaattccagggagaggccatctccacagagaggggagtaagagctgctctga 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ctgccttgtaattccagggagaggccatctccacagagaggggagtaagagctgctctga 219
Query: 665 gccctggtcaccat 678
||||||||||||||
Sbjct: 218 gccctggtcaccat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_i13.g1 MSMg01no512_i13.g1 CHROMAT_FILE:
MSMg01no512_i13.g1 PHD_FILE: MSMg01no512_i13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:43 2005
(659 letters)
>mm_chr18_67985110_67986168
Length = 1059
Score = 1193 bits (617), Expect = 0.0
Identities = 649/663 (97%), Gaps = 7/663 (1%)
Strand = Plus / Plus
Query: 1 taggattcatttattccatccatttataagatgttttaaaatgttagaatgttttgattt 60
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggattcatttattctatccatctataagatgttttaaaatgttagaatgttttgattt 260
Query: 61 ttaaaaagtgatagttacatagatttttaaaatgcaagcagttcatgtagtggtaagcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaaaagtgatagttacatagatttttaaaatgcaagcagttcatgtagtggtaagcat 320
Query: 121 tataaggaatgcctgagcagaaagctgcttcactctgctgtttagaatcctgtctgaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataaggaatgcctgagcagaaagctgcttcactctgctgtttagaatcctgtctgaggg 380
Query: 181 gatgacacggaacaaagaggcagccatccagagatccagaggaacagtgttcctggtaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgacacggaacaaagaggcagccatccagagatccagaggaacagtgttcctggtaaa 440
Query: 241 ggaaaaccatgtgtgtgaggcccagagaacaggtatcaagtggttcatcgaaggcagaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaaaccatgtgtgtgaggcccagagaacaggtatcaagtggttcatcgaaggcagaaa 500
Query: 301 aagctaatgtgaggggccagggtgaggataagtggggtaggagattggtggtatctcagt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagctaatgtgaggggccagggtgaggataagtggggtaggagattggtggtatctcagt 560
Query: 361 tgaacttccgggaaggacttggagtgagtagcttggtcgtgttgcttaggttcaattcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaacttccgggaaggacttggagtgagtagcttggtcgtgttgcttaggttcaattcca 620
Query: 421 cattgccactccctttgccaggagcctgcatcatggtgaaagccagtaagacacagagga 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 cattgccactccctttgccaggagcctgcatcgtggtgaaagccagtaagacacagagga 680
Query: 481 gggacagacagcagaggcttag----ggagaagagacagtcaagtcagtgaagggtgggg 536
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 ---acagacagccgaggcttagtcagggagaagagacagtcaagtcagtgaagggtgggg 737
Query: 537 acaaggaggacctattgtaacaggaaggtgtaaggatttaagatttattctacacaggga 596
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 738 acaaggaggacctattgtaacaggaagttgtaaggatttaagatttattctacacaggga 797
Query: 597 acttgagttgcaacataatttgttaaatgtatattgcagagtgtttattaaagctgaatt 656
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 798 acttgagttgcaacataatttgttaaatgtatattacagagtgtttattaaagctgaatt 857
Query: 657 cac 659
|||
Sbjct: 858 cac 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
