Query= MSMg01no513_e14.b1 MSMg01no513_e14.b1 CHROMAT_FILE:
MSMg01no513_e14.b1 PHD_FILE: MSMg01no513_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:44 2005
(671 letters)
>mm_chr18_87029959_87031029
Length = 1071
Score = 1156 bits (598), Expect = 0.0
Identities = 642/668 (96%), Gaps = 18/668 (2%)
Strand = Plus / Plus
Query: 4 ggaattcttgccttgcttttcatggttttcttcttttaaatatgaaactatatatttaaa 63
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 204 ggaattcttgccttgcttttcatggttttcttctattatatatgaaactatatatttaaa 263
Query: 64 acagtgatgtaactgctctgtaatgtaacagctcactcaagtacctgtgtttgtgtgtgt 123
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 acagtgatgtaactgctctgtaatgtaacagctcactaaagtacctgtgtttgtgtgtgt 323
Query: 124 ttaattagcattgtagctgcactgattgctgaaaagcctaagtctagtaggatagaatga 183
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttaattagcattgtggctgcactgattgctgaaaagcctaagtctagtaggatagaatga 383
Query: 184 atatacataagtaactttatattgtttctccattaataacatttacatagttaaaacttt 243
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 384 atatacataagtaactttatattgtttctccattaataacatttacattgttaaaacttt 443
Query: 244 gatgtaaaaggaatagtactttaggatttagacatgactattgactgagaagaataacaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gatgtaaaaggaatagtactttaggatttagacatgactattgactgagaagaataacaa 503
Query: 304 ggaaaaaattagatcgtgatgaagaaactgacaaggagagcattgcataagaaatcttcc 363
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggaaaaaattagatcctgatgaagaaactgacaaggagagcattgcataagaaatcttcc 563
Query: 364 ctataggacattcatatgagaatcgatggaaagcactttcagaaatacatgtgcatgtgt 423
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 564 ctataggacattcatatgagaatcgatggaaagcactttcagaaatagatgtgcatgtgt 623
Query: 424 gtgtcaaatgttctgaatattctgttttgaatatatcttcgagagtaccataatgaactc 483
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 624 gtgtcaaatgttctgaatattc------------------gagagtaccataatgaactc 665
Query: 484 atatttttgaatagaataattgaattacatttttaatattctgttaaagaaaatacggca 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 atatttttgaatagaataattgaattacatttttaatattctgttaaagaaaatacggca 725
Query: 544 agttatcagcattaataacttctccctcttcaaataatcctcagtcttataaaagtgtgt 603
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 726 agttatcagcattaataacttctccctcttcaaatattcctcagtcttataaaagtgtgt 785
Query: 604 accttacccttccaactaacttgaataaacagtctaagcatttctgcctgattctcattg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 accttacccttccaactaacttgaataaacagtctaagcatttctgcctgattctcattg 845
Query: 664 tttgctgt 671
||||||||
Sbjct: 846 tttgctgt 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_e14.g1 MSMg01no513_e14.g1 CHROMAT_FILE:
MSMg01no513_e14.g1 PHD_FILE: MSMg01no513_e14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:44 2005
(573 letters)
>mm_chr18_87199045_87200014
Length = 970
Score = 1042 bits (539), Expect = 0.0
Identities = 564/573 (98%), Gaps = 3/573 (0%)
Strand = Plus / Minus
Query: 1 tctgtggctaagtatcacccttcctcaatttaaaacccatagctgtgaaatagtaaccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 tctgtggctaagtatcacccttcctcaatttaaaacccatagctgtgaaatagtaaccta 711
Query: 61 tagatgaatgaacagatgtatcccattcatgaaagtctaacactggtaaagttacctcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tagatgaatgaacagatgtatcccattcatgaaagtctaacactggtaaagttacctcta 651
Query: 121 cacaaatatatctataaattagacaaaatgcccccaaatccactatctgttttgggtaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 cacaaatatatctataaattagacaaaatgcccccaaatccactatctgttttgggtaga 591
Query: 181 aatttagaaggctactatagaattagcattcaaagcacactgactaaacaaaccaactga 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aatttagaaagctactatagaattagcattcaaagcacactgactaaacaaaccaactga 531
Query: 241 aaaagtaagacaaagttaacagtaaaaacgattttacttcaggcaaacgaataaggaaca 300
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 530 aaaaataagacaaagttaacagtaaaaacgattttacttcaggcaaacaaataaggaaca 471
Query: 301 acagagaatcagcaacgtcttattgtcagacacttaaggaatgaaggaaattagaacttc 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 acagagaatcagcaacatcttattgtcagacacttaaggaatgaaggaaattagaacttc 411
Query: 361 tgaacctaacatattcaatccagacaggaacaaatgtaatttagcctagagtcaataata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tgaacctaacatattcaatccagacaggaacaaatgtaatttagcctagagtcaataata 351
Query: 421 tattcagtaaattctactaaaaacactgacactttatgcaaaataaatgttatatcaata 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 350 tattcagtaaattctactaaaaacactgacactttaagcaaaataaatgttat--caata 293
Query: 481 gctcacatcaatataaatttacacaagaatttatatagctgaaagtacaaccataaaaaa 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 292 gctcacatcaatataaatttacacaaaaatttatatagctgaaagtacaaccataaaaaa 233
Query: 541 ataattttgaatgacacatctggtatatctgat 573
||||||||||||||||||||||||||||||||
Sbjct: 232 -taattttgaatgacacatctggtatatctgat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 970
Length adjustment: 10
Effective length of query: 563
Effective length of database: 960
Effective search space: 540480
Effective search space used: 540480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
