Query= MSMg01no514_b11.b1 MSMg01no514_b11.b1 CHROMAT_FILE:
MSMg01no514_b11.b1 PHD_FILE: MSMg01no514_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:51 2005
(693 letters)
>mm_chr18_56166326_56167418
Length = 1093
Score = 859 bits (444), Expect = 0.0
Identities = 491/512 (95%), Gaps = 10/512 (1%)
Strand = Plus / Plus
Query: 5 gaattcttttcaccttcatgaggcttctgacccatggaatcactaatttaatagatagtt 64
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattcttttcacctttatgagacttctgacccatggaatcactaatttaataggtagtt 264
Query: 65 ttgggagctactagaactttgaatttttttagtgctttaacagaaaataaatacacttac 124
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgggagctactagaactttgaaattttttagtgctttaacagaaaataaatacacttac 324
Query: 125 tcagtccatacctgactcaataatcaatttatagaagcaatagaaagcctggtagctggt 184
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 tcagtccatacttgactcaataatcaatttatagaagcaatagaaagcctggtacctggt 384
Query: 185 ccaggctctggtgttaaatgtctgtttatcttgaccatgtgatataacagattcattggt 244
||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 385 ccaggctctggtgttaaatgtctgtttatattgaccatgtgat---------tcattggt 435
Query: 245 actgggaaaaaagatctggggaatggagggagggaaaaacatgatcaagatataatgtat 304
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 436 actgggaaaaaagatctggggaattgagggagggaaaaacatgatcaagatataatgtat 495
Query: 305 gatttttttcccataaaataactgtgaaatttaaactatatactgtttaaaatagatcat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gatttttttcccataaaataactgtgaaatttaaactatatactgtttaaaatagatcat 555
Query: 365 catcaagcaatcccctcaaatggatggaaccctttcatggtactgaggaaggctataatc 424
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 556 catcaagcaatcccctgaaatggatggagccctttcatggtactgaggaaggctataatc 615
Query: 425 tctgctgaagaaaatacttgctatctaaataataatttgtgtcatactgttgaattgtaa 484
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 616 tctgctgaagaaaatacttgctatcgaaataataatttgtgtcatactgttgaattgtaa 675
Query: 485 aaagagaccatctaatggagaaatattaaata 516
||| ||||||||||||||||||||||||||||
Sbjct: 676 aaa-agaccatctaatggagaaatattaaata 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_b11.g1 MSMg01no514_b11.g1 CHROMAT_FILE:
MSMg01no514_b11.g1 PHD_FILE: MSMg01no514_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:51 2005
(473 letters)
>mm_chr18_56318610_56319482
Length = 873
Score = 837 bits (433), Expect = 0.0
Identities = 461/473 (97%), Gaps = 5/473 (1%)
Strand = Plus / Minus
Query: 1 agctgttatttccttgggttaacatataagataaggaagacagtaaaatttacatctcgt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 782 agctgttatttccttgggttaacatataagataaggaagacagtaaaatttacatctcat 723
Query: 61 ctcttttgctcttttgtcattaagttagttttttttttttttttttttttgggagccact 120
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 722 ctcttttgctcatttgtcattaagttagttttttttttttttttttttt-----gccact 668
Query: 121 gttcaaaatttgggaaaataaggcccatgcaagaagacaattgcctttatttaacatata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 667 gttcaaaatttgggaaaataaggcccatgcaagaagacaattgcctttatttagcatata 608
Query: 181 aatgtttatagtactttggattaacaaaggaattctttgaatggcaacaacttgagtaaa 240
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 607 aatgtttatagtactttggattagcaatggaattctttgaatggcaacaacttgagtaaa 548
Query: 241 cttggattggaatccaaattgctcacagatttggtggcacagcagacagataacctaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cttggattggaatccaaattgctcacagatttggtggcacagcagacagataacctaaag 488
Query: 301 attaataaaagatcctaattgaacaatgcatttttagtacagataacatcccaaatttca 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 487 attaataaaagatcctaattgaacaatgcattttcagtacagataacatcccaaatttca 428
Query: 361 aactgttgattatatattctagaaattaaagcttgagtatttaaacagacaattttatgc 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aactgttgatgatatattctagaaattaaagcttgagtatttaaacagacaattttatgc 368
Query: 421 tgaagtggtgtatataagtatcaatgttaaatagaacttcttccctgaagggg 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgaagtggtgtatataagtatcaatgttaaatagaacttcttccctgaagggg 315
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
