XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAC
AGGTATACTTTCACAACAGCAAGCAGAAAGTTCAATCAGATATAGAATTA
AGCTTGCTAGTACAGCCGATACATGCATGTCTGTTTATTTAAAAGGTTGC
TAAAAAGAAAAAATGTCATAGATTCTACCTTTATAGGAGAGGATTTTGAC
ACAGTTCATTTTTAGAGACAGTGTCTCTAAAATTTGCGACTTCTAACATG
CCAGGTGCCCAGCCAGGCCTCTGCTCAGAAGTACAGTCACTTCTCAACAC
GTGGGAGATTCTTTCAGAAGAGTTTGTAGTGGTGAAGCTTCCTGTCTTGG
TATCTCACCTCTTCATTGATGCTGTCTGTTCTTTTTCTCCCTTCTTGGTA
GACACCCATGGGCTTCTGCGTCTTCACCTGTCTTCTGTCTGCTCAGATTT
CCCTTCAGATTCAGGTCAGTCCCTTCTGACACGGCCTCCTTAATTTGTCC
CCATTCCAGAGTCCTGCATTACAGACACTTTTCCATCATTTGTTCACTCT
TGTTTTTCATGGTCAGAATTCACTCACAGTGAAACTGTCATCTCTGGGCA
AACCATGATTGTCTATGTTGGAGTTGCCTTATCACTGCCCAAATAAGATA
TTGAAGTTCAAACCCTGATGAGCCAACCACAGTTGGAGGCAGCAGGAAGC
ATCTATCTCTGACTGAGCAAGAGGTGCCCAGTGGGGTGGGGGGGTTGGGG
GGGGGGTTNTNTTTTNNNT

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTACAGCTTTATCTGAAGGCAGCAGAAGAAGACT
ATATACCATACTGGTTTAGCTTGAGCTTAGGAGATCTCAGTCTGCCCCCC
ACAGTGATATGCTTCCACAAGGCCACTGTTGTGGAGGGGCCTGGTGCTGT
TTGTATGTTGTTGCTAATTCTGCTCTCCTTGGAAGGGTTGTGGACAAGGA
GTGAGTCTTCCTCAGGTGACTTCTTGTGAACCAATCCCCTAATGAATAAA
GGAGCCAGTCATTGGACAAGTAGGCGGGACTTCCAGGCTGGAGAGAGGAA
GAGAGGGAGTAGGAGAGAGTTAGGTCCTTTTGGACAGGGAGAGCGTGAGG
ACAAGATGTAATTACAAGTGTCTCCCGGTTTTAATGGCGGATCCATTAGG
ATTCACCATCGGAGGATTTAGAGTTAGGATTTTAGTTGTTGCGCCCAGCA
ATTGAGTTACTGTTGTTTCCAAACTAAGTCTGTATAGCGTTTTTCCTTCA
CATGGCTCATCCGGGTGCAAGAGAGAAAGGTACAGCGGCAAAGCATGGGT
TTGCATGAGGTGCACCACAAGGGTTGTGAGGGTTTTGAAGCATGGGGCTG
GCATGGTAGCAACTTGGCAGTGCTTGGTGGAGAGACTTTGGAGCTCTGAG
TCAGAGAGTCTCCCTAAGATTAGAACAGATCGACCATTTCCCGCCAGTGC
TTGGCCCGCTATACTGTCGGGGCAN

Query= MSMg01no514_j14.b1 MSMg01no514_j14.b1 CHROMAT_FILE:
MSMg01no514_j14.b1 PHD_FILE: MSMg01no514_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:33 2005
         (678 letters)



>mm_chr18_57716829_57717904
          Length = 1076

 Score = 1195 bits (618), Expect = 0.0
 Identities = 660/674 (97%), Gaps = 2/674 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcacaggtatactttcacaacagcaagcagaaagttcaatcagatatagaatta 64
           ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 876 gaattctcacaggtacactttcgcaacagcaagcagaaagttcaatcagatatagaatta 817

                                                                       
Query: 65  agcttgctagtacagccgatacatgcatgtctgtttatttaaaaggttgctaaaaagaaa 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 816 agcttgctagtacagctgatacatgcatgtctgtttatttaaaaggttgctaaaaag-aa 758

                                                                       
Query: 125 aaatgtcatagattctacctttataggagaggattttgacacagttcatttttagagaca 184
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 aaaggtcatagattctacctttataggagaggattttgacacagttcatttttagagaca 698

                                                                       
Query: 185 gtgtctctaaaatttgcgacttctaacatgccaggtgcccagccaggcctctgctcagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gtgtctctaaaatttgcgacttctaacatgccaggtgcccagccaggcctctgctcagaa 638

                                                                       
Query: 245 gtacagtcacttctcaacacgtgggagattctttcagaagagtttgtagtggtgaagctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gtacagtcacttctcaacacgtgggagattctttcagaagagtttgtagtggtgaagctt 578

                                                                       
Query: 305 cctgtcttggtatctcacctcttcattgatgctgtctgttctttttctcccttcttggta 364
           ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 577 cctgttttggtatctcacctcttcattgatgctgtctgttcttttcctcccttcttggta 518

                                                                       
Query: 365 gacacccatgggcttctgcgtcttcacctgtcttctgtctgctcagatttcccttcagat 424
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 517 gacacccatgggcttctgcgtcttcacctgtcttctgtctgcttagatttcccttcagat 458

                                                                       
Query: 425 tcaggtcagtcccttctgacacggcctccttaatttgtccccattccagagtcctgcatt 484
           |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 457 tcaggtcagtcccttccgacacggcctccctaatttgtccccattccagagtcctgcatt 398

                                                                       
Query: 485 acagacacttttccatcatttgttcactcttgtttttcatggtcagaattcactcacagt 544
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 acagtcacttttccatcatttgttcactcttgtttttcatggtcagaattcactcacagt 338

                                                                       
Query: 545 gaaactgtcatctctgggcaaaccatgattgtctatgttggagttgccttatcactgccc 604
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 337 ggaactgtcatctctgggcaaaccatgattgtctatgttggagttgccttatcaccgccc 278

                                                                       
Query: 605 aaataagatattgaagttcaaaccctgatgagccaaccacagttggaggcagcaggaagc 664
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aa-taagatattgaagttcaaaccctgatgagccaaccacagttggaggcagcaggaagc 219

                         
Query: 665 atctatctctgact 678
           ||||||||||||||
Sbjct: 218 atctatctctgact 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1076
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1066
Effective search space:   712088
Effective search space used:   712088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)