BAC Information

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BAC

Clone NameMSMg01-514O15
Chromosome18 (Build37)
Map Location 18,234,484 - 18,235,138
singlet/doubletsinglet
Overlap genenone
Upstream gene4921533I20Rik, LOC100040647
Downstream geneLOC100040658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514O15.T7 (MSMg01no514_o15.b1)MSMg01-514O15.TJ (MSMg01no514_o15.g1)
ACCAG587283AG587284
length754759
length of high quality
(start - end)
719 (36 - 754)655 (65 - 719)
definitionCHROMAT_FILE: MSMg01no514_o15.b1 PHD_FILE: MSMg01no514_o15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:59 2005CHROMAT_FILE: MSMg01no514_o15.g1 PHD_FILE: MSMg01no514_o15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:45:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGAA
GTTCTTCCGCAAATGGATGGAACTAGGAAATATCATCCTGAGTGAGGTAA
CCCAAACACAAAAGAGCATACATTGTATGCACTCAATTATAAGTGGATAT
TATCCCAGAAGTTCGGAATACAATTCACAGACAACATGAAGCTCAAGAAG
GAAGATCAAAGTGTAGATAATTCAGTCCTTCTTGGAAGGGGGATCCAAAT
ATCCATAAGAGGAGATACAGACACAATTCTAAGAATCCACGTTTTAGTTT
GAGTTTTATTGTGATGAAGAGTGGCCATGACCGAGGTAATTTTTGTAAAG
GAAAACTTTAGGTTCAGTCCTTCATAAACTTTTATCAATGGTGAGAAGAA
TGCAATGTCCAGGCAGAAATGGTACTAGAATAGCTGAAAGTTCTACGTCT
TGAACAGAAGGTAGCTAGTAGTAGACTCACTCTTCTGTAGGCAGCCAGGA
GGAGAATCTGTTCTGCACTGTGTTTAGCTAGAGCATTGGATTTAAGAGCC
CACCCTCACCATCTCACACTTCCTCCAACAAGGCCACACCTATCCTAATG
AGTACAACCCTCGTACTAGGGTCATTCTTATGGGCTAAGCATTCAAACAT
ATGAGTCTATGAGGGCCCAACTATTCAAACCACTCTTGTGCCATATCTTT
TAATCCTTCCTTAAGAGTGTTATCACCAGGGAAACAAATATTGAAATATA
TGGG
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACAGCTTTCTCCACTTTCCCTTGTTTCCTGAGGACA
TGAGGCAAGCAGAAAACTTTCATTTTCTCTTTCTTTTTTTTTTCTGTATG
TTTTCATTTAAAGATGCAAGTACCATAGCCTACTTCATGTCCATTAAAGC
AAGACTACTTCTGAAGACCACTAAACACATCATATTTTGTTTTATATAGT
AAACTAACGTTTGTTTCACAATCACTTACATTAACCTTCCTAAAGAGCTT
TCTTTTATCAAGCTATATAAATCTTAATATATTCATTATTGCTATTAAAA
GTGCCAAAACATTTTATATAATGAAACCTTAGAAGCACAGAATGGAAAAC
TCATTTTCATATCAGTCACATGGTGTTTTCTGAATTCATACAGAGTTAAC
TAGTATCATTTGGACCATTGCTTTAATAAAAAGATTACTTTGTGAAACTA
TATATATTCTAGGTCTTCCTGTCTGATATCTCACTTGTTAGGCTATTTTT
CCCTTGATATCTCCTATTCCATTTCTAAAATATCACAGCAACAAATAAAA
CACCAGGATTTAAAGTAATACTTAACTATTTAGAGATTTAAATATTGGGA
CTTTCAATAATATTTTTTATTTACACACACAAAATTTATTTATTATATCT
AATCCTCTAGGTTGACTGTAATAAAAATTTTAGAGATGTTAGATCAAAAG
TAGATACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_o15.g1 MSMg01no514_o15.g1 CHROMAT_FILE:
MSMg01no514_o15.g1 PHD_FILE: MSMg01no514_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:59 2005
         (655 letters)



>mm_chr18_18234284_18235338
          Length = 1055

 Score = 1251 bits (647), Expect = 0.0
 Identities = 653/655 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagctttctccactttcccttgtttcctgaggacatgaggcaagcagaaaactttcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagctttctccactttcccttgtttcctgaggacatgaggcaagcagaaaactttcatt 260

                                                                       
Query: 61  ttctctttcttttttttttctgtatgttttcatttaaagatgcaagtaccatagcctact 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctctttcttttttctttctgtatgttttcatttaaagatgcaagtaccatagcctact 320

                                                                       
Query: 121 tcatgtccattaaagcaagactacttctgaagaccactaaacacatcatattttgtttta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 tcatgtccattaaagcaagactacttctgaagaccactaaacacatcatactttgtttta 380

                                                                       
Query: 181 tatagtaaactaacgtttgtttcacaatcacttacattaaccttcctaaagagctttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatagtaaactaacgtttgtttcacaatcacttacattaaccttcctaaagagctttctt 440

                                                                       
Query: 241 ttatcaagctatataaatcttaatatattcattattgctattaaaagtgccaaaacattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatcaagctatataaatcttaatatattcattattgctattaaaagtgccaaaacattt 500

                                                                       
Query: 301 tatataatgaaaccttagaagcacagaatggaaaactcattttcatatcagtcacatggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatataatgaaaccttagaagcacagaatggaaaactcattttcatatcagtcacatggt 560

                                                                       
Query: 361 gttttctgaattcatacagagttaactagtatcatttggaccattgctttaataaaaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttttctgaattcatacagagttaactagtatcatttggaccattgctttaataaaaaga 620

                                                                       
Query: 421 ttactttgtgaaactatatatattctaggtcttcctgtctgatatctcacttgttaggct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttactttgtgaaactatatatattctaggtcttcctgtctgatatctcacttgttaggct 680

                                                                       
Query: 481 atttttcccttgatatctcctattccatttctaaaatatcacagcaacaaataaaacacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttttcccttgatatctcctattccatttctaaaatatcacagcaacaaataaaacacc 740

                                                                       
Query: 541 aggatttaaagtaatacttaactatttagagatttaaatattgggactttcaataatatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggatttaaagtaatacttaactatttagagatttaaatattgggactttcaataatatt 800

                                                                  
Query: 601 ttttatttacacacacaaaatttatttattatatctaatcctctaggttgactgt 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttttatttacacacacaaaatttatttattatatctaatcctctaggttgactgt 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)