Query= MSMg01no515_i06.b1 MSMg01no515_i06.b1 CHROMAT_FILE:
MSMg01no515_i06.b1 PHD_FILE: MSMg01no515_i06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:52 2005
(427 letters)
>mm_chr18_64958782_64959609
Length = 828
Score = 758 bits (392), Expect = 0.0
Identities = 416/424 (98%), Gaps = 1/424 (0%)
Strand = Plus / Plus
Query: 3 gaattcttactcccttttgccccaaaccctagtatttgatagactagcattctcaggatg 62
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcttactccctagtggcccaaaccctagtatttgatagactagcattctcaggatg 262
Query: 63 atgactggatccagatggtcaaggtatccccatatttctctatattttctttatatctta 122
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atggctggatccagatggtcaaggtatccccatatttctctatattttctttatatctta 322
Query: 123 tgttggtcctgattgatgtggttttttttc-aatgctatgactattttaacactatcggt 181
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 323 tgttggtcctgattgatgtggttttttttcaaatgctatgactattttaacactattggt 382
Query: 182 attattatgatttaaaatgaaatgtggtccacaggctgggatggtgctggagatggactg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 attattatgatttaaaatgaaatgtggtccacaggctgggatggtgctggagatggactg 442
Query: 242 agagttctatgtcttaatctacaggccacagagaccttaaagcctacctccacagtgatg 301
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 443 agagttctatgtcttaatctacaggccacagagaccttaaagcccacctccacagtgatg 502
Query: 302 tactttcttcaacaaggccacacctcctaatagtgccactccccataggccaggctttta 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cactttcttcaacaaggccacacctcctaatagtgccactccccataggccaggctttta 562
Query: 362 aacacatgagtctatgggagctattcctattcaaatcatgagaggtaaggggagggggag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aacacatgagtctatgggagctattcctattcaaatcatgagaggtaaggggagggggag 622
Query: 422 gggg 425
||||
Sbjct: 623 gggg 626
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 828
Length adjustment: 9
Effective length of query: 418
Effective length of database: 819
Effective search space: 342342
Effective search space used: 342342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_i06.g1 MSMg01no515_i06.g1 CHROMAT_FILE:
MSMg01no515_i06.g1 PHD_FILE: MSMg01no515_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:52 2005
(591 letters)
>mm_chr18_65086016_65087006
Length = 991
Score = 1096 bits (567), Expect = 0.0
Identities = 582/587 (99%)
Strand = Plus / Minus
Query: 1 caacaccacccacagtcgtgagaagccatctccttcccctttcccaccagtgcctgaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 caacaccacccacagtcgtgagaagccatctccttcccctttcccaccagtgcctgaaat 728
Query: 61 tgccttccatacctgttcacttcccagttccctcaccattctagactgctagaatcccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tgccttccatacctgttcacttcccagttccctcaccattctagactgctagaatcccaa 668
Query: 121 gctgtctgaggatcaagagaggaaggagcaagattccagctgcaataaagcagaggttga 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gctgtctgacgatcaagagaggaaggagcaagattccagctgcaataaagcagaggttga 608
Query: 181 gggtgtatgaatgagaggagtctcatacataagatctgtgtgcataataaggaagagcaa 240
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 607 gggtgtatgaatgagaggagtctcgtacataggatctgtgtgcataataaggaagagcaa 548
Query: 241 gccaggtgcaggggtggggtgcatgcacaacggtgagccagccatgcacagagagatgca 300
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 547 gccaggtgcaggggtggggtgcatgcgcaagggtgagccagccatgcacagagagatgca 488
Query: 301 cgatgctagtaacttcagtgccgggctagccactgtccacactgttctagatgtgtccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cgatgctagtaacttcagtgccgggctagccactgtccacactgttctagatgtgtccaa 428
Query: 361 cctatggcccaaaggctaaacgcatctcaaagtagctattcatgttgataaacacatgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cctatggcccaaaggctaaacgcatctcaaagtagctattcatgttgataaacacatgac 368
Query: 421 atttacatttatagatgtcatgtgtttgtgttggctgaagagaactggtgcacaggcagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 atttacatttatagatgtcatgtgtttgtgttggctgaagagaactggtgcacaggcagg 308
Query: 481 tgaaaatggtcacaacttccaggagaaaagggccattgcttcaggccatcaaattcctag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tgaaaatggtcacaacttccaggagaaaagggccattgcttcaggccatcaaattcctag 248
Query: 541 aacagagagcaaaggacctccagagtaaacggaggcttcactggggg 587
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aacagagagcaaaggacctccagagtaaacggaggcttcactggggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
