Query= MSMg01no516_c07.b1 MSMg01no516_c07.b1 CHROMAT_FILE:
MSMg01no516_c07.b1 PHD_FILE: MSMg01no516_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:45 2005
(676 letters)
>mm_chr18_57082565_57083638
Length = 1074
Score = 1270 bits (657), Expect = 0.0
Identities = 670/675 (99%), Gaps = 2/675 (0%)
Strand = Plus / Plus
Query: 1 cagtttatttggaggattcatgtgaagccaggaggatctgtatagcccttcatacattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtttatttggaggattcatgtgaagccaggaggatctgtatagcccttcatacattta 260
Query: 61 gacatatatattagggatttacatatttcatccaaattttatgtaacataaaaacaaaaa 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacatatatattagggatttacgtatttcatccaaattttatgtaacataaaaacaaaaa 320
Query: 121 cacttgtgatggattcttaaaaccactccagtttataatgaacaccactattaaactgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacttgtgatggattcttaaaaccactccagtttataatgaacaccactattaaactgta 380
Query: 181 atcaagaacataaaatgactgtgaaaaagatcaactgtgcttcatgaaggtgctgtccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaagaacataaaatgactgtgaaaaagatcaactgtgcttcatgaaggtgctgtccct 440
Query: 241 attgtcactaaaaataactataccattaaaggaatttatagcttttttaagtatcagtca 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgtcactaaaagtaactataccattaaaggaatttatagcttttttaagtatcagtca 500
Query: 301 cttgccagcaggaacttaacaagctgttataataatactcctcccatacttttttagtca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgccagcaggaacttaacaagctgttataataatactcctcccatacttttttagtca 560
Query: 361 tcagaatttttatgataaagcctttttattattttttaaactacacattgtgaaccattg 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 tcagaatttttatgataaagcctttttattattttttaagctacacattgtgaaccattg 620
Query: 421 ttactagtgattaggccaaatatgaactgatttccagggtatcaattcctaaaggcatgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttactagtgattaggccaaatatgaactgatttccagggtatcaattcctaaaggcatgt 680
Query: 481 ttcattaggattagtaaggcaatcttaacttcagccttggcagtaaagttctatttactt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcattaggattagtaaggcaatcttaacttcagccttggcagtaaagttctatttactt 740
Query: 541 ttattaaactgtgtgtgtgtgtgttcaaaacaatttatttttagtacatcctctgaagca 600
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttattaaactgtgtgtgtgtgt--tcaaaacaatttatttttagtacatcctctgaagca 798
Query: 601 aaagacaacagtttgtgatatacatgttactgccaaccaaccttgctgtcgaggtaacaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 aaagacaacagtttgtgatatacatgttactgccaaccaaccttgctgtcgaggtaacaa 858
Query: 661 ccacagttcttctca 675
|||||||||||||||
Sbjct: 859 ccacagttcttctca 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1074
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1064
Effective search space: 708624
Effective search space used: 708624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_c07.g1 MSMg01no516_c07.g1 CHROMAT_FILE:
MSMg01no516_c07.g1 PHD_FILE: MSMg01no516_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:45 2005
(630 letters)
>mm_chr18_57212674_57213702
Length = 1029
Score = 1143 bits (591), Expect = 0.0
Identities = 621/631 (98%), Gaps = 3/631 (0%)
Strand = Plus / Minus
Query: 1 cactagaaggatggagcagctgagagtgggtggtggaacatatccggtaccctaaaatct 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 829 cactagaaggatggagcagctgagagtgggtggtggaacatatctggtaccctaaaatct 770
Query: 61 accttcagtagatgctagtgttctaagattcagctcctacctgaaaccaggagcactcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 accttcagtagatgctagtgttctaagattcagctcctacctgaaaccaggagcactcac 710
Query: 121 ttggtctccagaacttcacctggatgcagaaccaccagactgaatggggaagcaagatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ttggtctccagaacttcacctggatgcagaaccaccagactgaatggggaagcaagatca 650
Query: 181 cctctttgtcactaactggtttccttcagcaggtttgttttggtggaagtcccccccaga 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 649 cctctttgtcactaactggtttccttcagcaggtttgttttggtggaagt-ccccccaga 591
Query: 241 gtaatgttgggtgtcaaattagatgcctg-ctgatatagtgaaatgaggcttgttaatgg 299
||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||
Sbjct: 590 gtaatgttgggtgtcaaattacatgcctgtc-gatatagtgaaatgaggcttgttaatgg 532
Query: 300 cgaaatgtggggctttgtatcccaaagtaaaaagctcagacacaccttcccaagatgctt 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 531 cgaaatgtggggctttgtatcccaaagtaaaaagctcagacacacctttccaagatgctt 472
Query: 360 cacttttgcagacatcgtatggtgtgtgttgaggacagagaatttctgagcatcttctcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 cacttttgcagacatcgtatggtgtgtgttgaggacagagaatttctgagcatcttctcc 412
Query: 420 atggatccaacattggctgtgttcacactgcccttctgcactgattcaagtgctagttgt 479
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 411 atggatccaacattggctgtgttcacactgctcttctgcactgattcaagtgctagttgt 352
Query: 480 acctactgggtatatgtcctacctgggcatctggtaccctgctttctataatgttggcaa 539
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 351 acctactgggtatatgtcctacctgggcatctggtaccctgctttctacaatgttggcaa 292
Query: 540 gcccccaactgttactgataggaatgagaaacaaggcagcctttctgtggcagtcagagt 599
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 291 gcccccaactgctactgataggaatgaggaacaaggcagcctttctgtggcagtcagagt 232
Query: 600 tacagtctaaagaaaaacaaaatgtttgtgt 630
|||||||||||||||||||||||||||||||
Sbjct: 231 tacagtctaaagaaaaacaaaatgtttgtgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1029
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1019
Effective search space: 631780
Effective search space used: 631780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
