Query= MSMg01no516_c17.b1 MSMg01no516_c17.b1 CHROMAT_FILE:
MSMg01no516_c17.b1 PHD_FILE: MSMg01no516_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:47 2005
(705 letters)
>mm_chr18_55162858_55163962
Length = 1105
Score = 1309 bits (677), Expect = 0.0
Identities = 695/701 (99%)
Strand = Plus / Plus
Query: 5 gaattctagtctcctcctagcagtctttctatcaagattagaactttctgatccaccagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagtctcctcctagcagtctttctatcaagattagaactttctgatccaccagc 264
Query: 65 accatgtctttctataggctgccatgcttcctgtcatgcggctaatgagccaaacctctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accatgtctttctataggctgccatgcttcctgtcatgcggctaatgagccaaacctctg 324
Query: 125 caactgtaaatcagccccaattaaatgtttgcctttgtaagagttgccttggtcatggtg 184
|||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 caactgtaaaccagccccagttaaatatttgcctttgtaagagttgccttggtcatggtg 384
Query: 185 tctcttcacaacagtgaaatcctaacttggacagagtatgtctaggaagtaaacaatcaa 244
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 385 tctcttcacaacagtgaaatcctaacttggacagagtatgtctaggaagtaagcaatcaa 444
Query: 245 tgattgcacatgattcaggaaaatgaagtcatctgcagactgaaaagcttccgttggtct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgattgcacatgattcaggaaaatgaagtcatctgcagactgaaaagcttccgttggtct 504
Query: 305 tccttcaggggagtgttaaaattaaatgaattttaacattcagccttgcaaccttcatca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccttcaggggagtgttaaaattaaatgaattttaacattcagccttgcaaccttcatca 564
Query: 365 caatgtaattttagaagattatgattacccctccccccaaaaagaaactacaggtctatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caatgtaattttagaagattatgattacccctccccccaaaaagaaactacaggtctatt 624
Query: 425 tatactggcacatgggcttcaaatcaaaacattagagatcacatttacagggattacatg 484
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 625 tataatggcacatgggcttcaaatcgaaacattagagatcacatttacagggattacatg 684
Query: 485 gtagtcacatcacagttatgactagaaaaaaatggggttggcaagatggctcagcaagga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtagtcacatcacagttatgactagaaaaaaatggggttggcaagatggctcagcaagga 744
Query: 545 aggaacaagcctgatgtcctagttcaatccagaccccatataaaggtggaaggagagaat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aggaacaagcctgatgtcctagttcaatccagaccccatataaaggtggaaggagagaat 804
Query: 605 caactccacagagttgttctctgtcctctacaggagtgtcatggcatgctcatactccca 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 caactccacagagttgttctctgtcctctacaggagtgtcatggcatgctcatactccca 864
Query: 665 tacacatatcacacacacacacacacacacacacacacaca 705
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tacacatatcacacacacacacacacacacacacacacaca 905
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space: 761025
Effective search space used: 761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no516_c17.g1 MSMg01no516_c17.g1 CHROMAT_FILE:
MSMg01no516_c17.g1 PHD_FILE: MSMg01no516_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:47 2005
(668 letters)
>mm_chr18_55302965_55304031
Length = 1067
Score = 1230 bits (636), Expect = 0.0
Identities = 660/668 (98%), Gaps = 1/668 (0%)
Strand = Plus / Minus
Query: 1 agaatataaaaggacagagagacagcatgagacttccagctacctcttttcggatcagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 agaatataaaaggacagagagacagcatgagacttccagctacctcttttcggatcagca 808
Query: 61 tgggcctgaacgtgacatagctatagcccaggaaaattccacagttctgatgcagataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 tgggcctgaacgtgacatagctatagcccaggaaaattccacagttctgatgcagataaa 748
Query: 121 cttggaaaccagagacagcccagcatctcacagttaattaaagacgtgagtgaaggcacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 cttggaaaccagagacagcccagcatctcacagttaattaaagacgtgagtgaaggcacc 688
Query: 181 aaagcttgctcccttctgcttgaataattcactacctttatccattattaaaacccgtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aaagcttgctcccttctgcttgaataattcactacctttatccattattaaaacccgtga 628
Query: 241 cttccccacaatgattcccagctccagatggattggtctcagaacccagagataaattgt 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cttccccacaatgattcccatctccagatggattggtctcagaacccagagataaattgt 568
Query: 301 aacacggcctacagctatattaataaattgaaatgaacatttatttgctcatctaattag 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aacacggcctacagctatactaataaattgaaatgaacatttatttgctcatctaattag 508
Query: 361 aactgtggttttcccaaatagtgtagccatgcattacggtgacagacagcagtacctacc 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aaccgtggttttcccaaatagtgtagccatgcattacggtgacagacagcagtacctacc 448
Query: 421 ttctgtgagataaagtgaataggatgcctttgaccccagttttgggatgtctctccatga 480
|||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct: 447 ttctgtgagataaagtgaataggatgactttgaccc-agatttgggatgtctctccatga 389
Query: 481 gaaagtctttggttgatgctgtctcttttaaaccatttattctgttggtctgctttgctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gaaagtctttggttgatgctgtctcttttaaaccatttattctgttggtctgctttgctg 329
Query: 541 atcccagcttggcaggatagacgagagctgagctggtgaggtacttcctcagacggatac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 328 atcccagcttggcaggatagacgagagctgagctggtgaggtacttcctcagatggatac 269
Query: 601 agagcccgttccatatagaacacacattcatcttttgtctcttttcttttttaagtgctg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agagcccgttccatatagaacacacattcatcttttgtctcttttcttttttaagtgctg 209
Query: 661 ttggaggg 668
| ||||||
Sbjct: 208 tcggaggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1067
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1057
Effective search space: 695506
Effective search space used: 695506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
