Query= MSMg01no516_e15.b1 MSMg01no516_e15.b1 CHROMAT_FILE:
MSMg01no516_e15.b1 PHD_FILE: MSMg01no516_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:57 2005
(661 letters)
>mm_chr18_49733127_49734190
Length = 1064
Score = 1094 bits (566), Expect = 0.0
Identities = 611/634 (96%), Gaps = 15/634 (2%)
Strand = Plus / Minus
Query: 43 caaggccatatttaactgtgttaagcatagttaacacattttaaataattattttagaat 102
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1064 caaggccatatttaactgtgttaagcatagttaacacattttaaataattgttttagaat 1005
Query: 103 ctctttgctggctctcttttcctggaaactccatgtactattggttgttgaatttgtcac 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 ctctttgctggctctcttttcctggaaactccatgtactattggttgttgaatttgtcac 945
Query: 163 tgagtattactttcatataaatgtgaatatgcatacacacacacagacacac-------- 214
||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 tgagtattattttcatataaatgtgaatatgcatacacacacacagacacacacacacac 885
Query: 215 -t---cacagacacacacacgtagtacgtatgttttaagtggctatg---tttttttttt 267
| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 884 atacacacacacacacacacgtagtacgtatgttttaagtggctatgggttttttttttt 825
Query: 268 ttggcaagtttgccttaaaccttgaatctgttgttgcttgtctggtctacaaagagacct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ttggcaagtttgccttaaaccttgaatctgttgttgcttgtctggtctacaaagagacct 765
Query: 328 tgataattgacagttgtattctagacctgagaggactcacagagctatgattatagttgc 387
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 764 tgataattgacagttgtattccagacctgagaggactcacagagctatgattataggtgc 705
Query: 388 cttctagctgtcactttgatttcggtgggattgtacttcaatgctttgcctaggagcact 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 cttctagctgtcactttgatttcggtgggattgtacttcaatgctttgcctaggagcact 645
Query: 448 aagagagagacagttttcctttgcaggttccctttagaaaaacttcaccaatatggggtg 507
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 aagagagagacagttttcctttgcaggttccctttagaaaaacttcaccaatatggggtc 585
Query: 508 ggggggagaagacaccagctatcttttcatctggaattaatgtgatcgtcagtgtctgaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ggggggagaagacaccagctatcttttcatctggaattaatgtgatcgtcagtgtctgaa 525
Query: 568 gaaggaagaggagggctggtttcggtttcagtgaaatccagactttcaaagccgttgagc 627
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaagggagaggagggctggtttcggtttcagtgaaatccagactttcaaagccgttgagc 465
Query: 628 tgttgatcctgctcctttctgtcccctaccactt 661
||||||||||| ||||||||||||||||||||||
Sbjct: 464 tgttgatcctgttcctttctgtcccctaccactt 431
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1064
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1054
Effective search space: 686154
Effective search space used: 686154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_e15.g1 MSMg01no516_e15.g1 CHROMAT_FILE:
MSMg01no516_e15.g1 PHD_FILE: MSMg01no516_e15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:57 2005
(477 letters)
>mm_chr18_49545722_49546600
Length = 879
Score = 893 bits (462), Expect = 0.0
Identities = 472/476 (99%), Gaps = 2/476 (0%)
Strand = Plus / Plus
Query: 1 agtcatgtacccagctctgtatgtggggaagggttgggatgtggttactaagaaagcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcatgtacccagctctgtatgtggggaagggttgggatgtggttactaagaaagcaaa 260
Query: 61 actgaagcaccgtatctataaatacatgttcgctctacaaagacattaaattgtgattct 120
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 261 actgaagcaccgtatctataaatacatgttcgctctacgaagacattaaatcgtgattct 320
Query: 121 gggggaaagataaggatatctataagaatgagagatgaaatttacctaattaaaatagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggggaaagataaggatatctataagaatgagagatgaaatttacctaattaaaatagtt 380
Query: 181 aagaaatacactcctaggtattgcaagagtcattatcagatttgggttaaactggaaccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaaatacactcctaggtattgcaagagtcattatcagatttgggttaaactggaaccc 440
Query: 241 ctcatgctaagctcaggctttgcctttcattgcccataagggtgtggctctgtcaccctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcatgctaagctcaggctttgcctttcattgcccataagggtgtggctctgtcaccctt 500
Query: 301 ctatgacaagaaaggttttcgaaagaatggactgatattatcctaatggacggtagaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatgacaagaaaggttttcgaaagaatggactgatattatcctaatggacggtagaatg 560
Query: 361 aagctgggtcccagatgacgaagagtagcttaaagttttcaaaaagcctgtctatccatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagctgggtcccagatgacgaagagtagcttaaagttttcaaaaagcctgtctatccatt 620
Query: 421 tctgtggcaaaggaagagagagagagag--ggggggggcggtataaggggggatgt 474
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 tctgtggcaaaggaagagagagagagagagggggggggcggtataaggggggatgt 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 879
Length adjustment: 10
Effective length of query: 467
Effective length of database: 869
Effective search space: 405823
Effective search space used: 405823
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
