Query= MSMg01no516_l06.b1 MSMg01no516_l06.b1 CHROMAT_FILE:
MSMg01no516_l06.b1 PHD_FILE: MSMg01no516_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:32 2005
(655 letters)
>mm_chr18_27232897_27233951
Length = 1055
Score = 1236 bits (639), Expect = 0.0
Identities = 648/651 (99%)
Strand = Plus / Plus
Query: 5 gaattcatctgagcatacgcatcatcttgttgtggtgacccattggtaacaaaccacaca 64
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 205 gaattcatctgagcatacgcatcatcttgttgtggtgtcccattggtaacaaaccacaca 264
Query: 65 cttcttagctccttttatctatttgtacttgcaactgtacatagagagataggacatcca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttcttagctccttttatctatttgtacttgcaactgtacatagagagataggacatcca 324
Query: 125 gtgttattccattacagcatctttggtgccctttggttagtaccttcaagttatttgaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgttattccattacagcatctttggtgccctttggttagtaccttcaagttatttgaac 384
Query: 185 tgagaagctctggatgtacatagatctctaaactatagaacaattgtagtatatccagtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgagaagctctggatgtacatagatctctaaactatagaacaattgtagtatatccagtt 444
Query: 245 gtgcatggtgtgagccaatacaataagtctcatttatcaacatctatactgtactcattt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgcatggtgtgagccaatacaataagtctcatttatcaacatctatactgtactcattt 504
Query: 305 ttcttcagaaatcttagttaattcagatattgactccattgtgagcaaaatgggacagga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcttcagaaatcttagttaattcagatattgactccattgtgagcaaaatgggacagga 564
Query: 365 tatgactggataatcagaaccttgtccttaggaacagaggacaggtgacatcaaagatgc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tatgactggataatcagaaccttgtccttaggaacagaggacaggtgacatcaaagatgc 624
Query: 425 aaaatctgcttgacttgtgggtttatttgtaggcttaaaaatttcaaaacctactttagt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaatctgcttgacttgtgggtttatttgtaggcttaaaaatttcaaaacctactttagt 684
Query: 485 aagggttctcaaatggtttgaccccacttctagctcaccttccaaaggtaggggagaaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aagggttctcaaatggtttgaccccacttctagctcaccttccaaaggtaggggagaaaa 744
Query: 545 gataataagtaagacaaagggatgtggttctttttagaagtagttctttggggcaagtcc 604
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 745 gataataagtaagacaaagggatgtggttctttttagaagtagttctctggggcaagtcc 804
Query: 605 aatcctggtttgtcactatactagaagtctagttcagtagtttcattccag 655
|||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 805 aatcctggtttgtcactatactagaaatctagttcagtagtttcattccag 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_l06.g1 MSMg01no516_l06.g1 CHROMAT_FILE:
MSMg01no516_l06.g1 PHD_FILE: MSMg01no516_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:32 2005
(605 letters)
>mm_chr18_27406837_27407841
Length = 1005
Score = 890 bits (460), Expect = 0.0
Identities = 479/490 (97%), Gaps = 9/490 (1%)
Strand = Plus / Minus
Query: 1 actgattgaacattatttattttgtactaatgttttgtgtagaattaataacctgcagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 actgattgaacattatttattttgtactaatgttttgtgtagaattaataacctgcagtt 423
Query: 61 tcaagaccgcaggattcaagacaggaaaaaggcagagacagaaatggaaagaaaatttaa 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tcaagacagcaggattcaagacaggaaaaaggcagagacagaaatggaaagaaaatttaa 363
Query: 121 taagtagtgctgaactatatctcagagtccacgcctggggtcatatcccacccttggtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 taagtagtgctgaactatatctcagagtccacgcctggggtcatatcccacccttggtga 303
Query: 181 atctgacatagtttgaagatgaaaacacattctttgttttcagaaatccccaaggacatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atctgacatagtttgaagatgaaaacacattctttgttttcagaaatccccaaggacatt 243
Query: 241 tgagtttggagttccttttaaagttgttttgaatgcattatagtgtgtgtgtgtgtgtgt 300
|||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 242 tgagtttggagttccttttaaagttgttttgaatgcattata--------gtgtgtgtgt 191
Query: 301 gtgtgtgtgtgtgtgtgtgcg-cgcgcgggtgcctgtgtgtttggcattcgtccttctga 359
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gtgtgtgtgtgtgtgtgtgcgccgcgcgggtgcctgtgtgtttggcattcgtccttctga 131
Query: 360 gaaatttaaagcaaacctcagtgcctttccttcctttaatttatttgtttcttttgagtt 419
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gtaatttaaagcaaacctcagtgcctttccttcctttaatttatttgtttcttttgagtt 71
Query: 420 tattttgaaattctattttagatgtgatgggaggaaatttaaattggctgctattccagt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 tattttgaaattctattttagatgtgatgggaggaaatttaaattggctgctattccagt 11
Query: 480 ggccttatca 489
||||||||||
Sbjct: 10 ggccttatca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
