Query= MSMg01no516_l09.b1 MSMg01no516_l09.b1 CHROMAT_FILE:
MSMg01no516_l09.b1 PHD_FILE: MSMg01no516_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:33 2005
(650 letters)
>mm_chr18_65845642_65846690
Length = 1049
Score = 1203 bits (622), Expect = 0.0
Identities = 640/646 (99%), Gaps = 1/646 (0%)
Strand = Plus / Minus
Query: 5 gaattcaccccacattataggaagcatttccatatcagtgtgcacagcagtgccttcatg 64
||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 849 gaattcaccccgca-aataggaagcatttccgtatcagtgtgcacagcagtgccttcatg 791
Query: 65 accccgggatgcaggggagcagccccgcaggccttccacacctcagaagacaaagcaagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 accccgggatgcaggggagcagccccgcaggccttccacacctcagaagacaaagcaagg 731
Query: 125 gtgtgggaagggctctagtaggaaaacacggggaaggaccgtaatggccggtgataagcg 184
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gcgtgggaagggctctagtaggaaaacacggggaaggaccgtaatggccggtgataagcg 671
Query: 185 ggcctcgttctgacaaccagaagctgagtacataggcccaggagggaggaaggcctgtgt 244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ggcctcgttctgacaactagaagctgagtacataggcccaggagggaggaaggcctgtgt 611
Query: 245 gctttgcggacagtgggttccacagaaaggggaaacacagcacacttaggccaaggaaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gctttgcggacagtgggttccacagaaaggggaaacacagcacacttaggccaaggaaga 551
Query: 305 cagagtggagcacctcacaggagaggatgggggacacatggttttattacaactagaggg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 cagagtggagcacctcacaggagaggatgggggacacatggttttattacaactagaggg 491
Query: 365 gacgaagaagagacctcaaggacccagcaccggctcctgccccagcaactgtcccagtcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gacgaagaagagacctcaaggacccagcaccggctcctgccccagcaactgtcccagtcc 431
Query: 425 tctctgtcacatgtcccctctggagctgccttcttccttttcccaagctttctaaatccc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tctctgtcacatgtcccctctggagctgccttcttccttttcccaagctttctaaatccc 371
Query: 485 aaaggcccccatttctacatcctctgtactagggcaccgctcttatggcctgcccttgca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaaggcccccatttctacatcctctgtactagggcaccgctcttatggcctgcccttgca 311
Query: 545 gctacctctgctgtggagaaggcctgtcctaatgccacacccacctgactttgtcccaag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gctacctctgctgtggagaaggcctgtcctaatgccacacccacctgactttgtcccaag 251
Query: 605 gaagtgcacactcaatgaccgcggttaatgtgtgttttgagaaact 650
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gaagtgcacactcaatgaccgcggttaatgtgtgttttgagaaact 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1049
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1039
Effective search space: 664960
Effective search space used: 664960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_l09.g1 MSMg01no516_l09.g1 CHROMAT_FILE:
MSMg01no516_l09.g1 PHD_FILE: MSMg01no516_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:33 2005
(572 letters)
>mm_chr18_65689960_65690931
Length = 972
Score = 1019 bits (527), Expect = 0.0
Identities = 565/585 (96%), Gaps = 14/585 (2%)
Strand = Plus / Plus
Query: 1 ctctcctttgtggaaaaacagctttctcattgtttcccactcaaagaaacacttaagttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ctctcctttgtggaaaaacagctttctcattgtttcccactcaaagaaacacttaagttt 248
Query: 61 gcttccctccaggtctgaagctggtgcctaatgtggctgaaaatgctttgagcccagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gcttccctccaggtctgaagctggtgcctaatgtggctgaaaatgctttgagcccagaga 308
Query: 121 ggaaatccaatgccccagggctgggggttgaatggctgccttgttaccaacggccttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ggaaatccaatgccccagggctgggggttgaatggctgccttgttaccaacggccttctc 368
Query: 181 ctttgtctgccttcgatctcaaatgacatgtttggacacaaagcctcttaggtagaaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ctttgtctgccttcgatctcaaatgacatgtttggacacaaagcctcttaggtagaaatg 428
Query: 241 actacatttgccagggcccctaatttagactgtggtttattatttcaaagttgttttttt 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 429 actacatttgccagggcccctaatttagactgtggtttattatttcagagttgttttttt 488
Query: 301 ------------ctttctttttatttttttttatgataagtccagtgagattttacagct 348
||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 489 ttttctttctttctttctttttattttttttcatgataagtccagtgagattttacagct 548
Query: 349 aaatcatgaccctcattttaaaaaatacatttattgtcgtgtttattagtattcttgctc 408
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aaatcatgaccctcattaaaaaaaatacatttattgtcgtgtttattagtattcttgctc 608
Query: 409 ccccccc-cacctcacacacacccctctttgtaaggtttcctctgacagagagccgtctg 467
||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 609 cccccccacaca-cacacacacccctctttgtaaggtttcctctgacagagagctgtctg 667
Query: 468 catctctccagtgaacattttgccttgctgctgtcaaggccattttcttaacctccctga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 catctctccagtgaacattttgccttgctgctgtcaaggccattttcttaacctccctga 727
Query: 528 gatatttatcaagaggtcttttaaacctttctatgtgacaggagc 572
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gatatttatcaagaggtcttttaaacctttctatgtgacaggagc 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
