TTTTTTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTGCATTATTCCATCTGGTCCTGGGCTTTTTTTTTTTT
TTTTTTGGTTGGGAGACTTTTAATGACTTCTATTTCTTTAGGGACTGTTT
AGATGGTTTATTTCTTTAGGGACTGTTTGGATGGTTTATCTAATGGTATT
TGGTATCTTTCTAGAAAATTGTCTATTTTATCCAGATTTTCCAGTTGTGT
TGAGTATAGGCTTTTGTAGTAGGATCTGATGGTATTTTGAATTTCCTCAG
TTTCTGTTGTTATATCTCCCTTTTCATTTCTGATTTTGTAAATTTGGATA
CTGTCTCTCTGCCCTCTGGTTAGTCTGGCTAAGGATTTATCTATCTTGTT
GATTGTCTCAAAGAACCAGCTCCTGGTTTGGTTGATTCTTTGTATAGTTC
TTTTTGTTTCTACTTGGTTGATTTCAGCCTTGAGTTTAATTATTTCCTGC
CATCTACTCCTCTTGGGATTTGTGACCTTATATGGTCATTTTATGTTCAA
TTTTAGAGAAGGTGCCATGAGGTACTGAGAAGAAAATATATTCTTTTGTT
TTAGGATGAAATGTTCTATATATATCTGTTAAATCCATTTGGTTCATAAC
TTCTGTTAGTTTCACTTTGTTTAGTTTGTGCTTCCATGATCTGTCCATTG
ATGAGAGTGGGGTTTTGAAGTCTCCCACTATTGTTGTATGT

NTTTTAACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCAAAGTTCCCCCAAG
GGTACAAAAGTGCTGAGAGCCAGGACAATCCTTTTCTCCAGATTCTGAAC
ACCCACATACCCACAAAGTAGAGTGCCAGAAGGCATCTGAGGACAGCTAA
CTCAGATAAAATCCATTCATTCAGACTCTTAATTATAAACCCTGAAGTTT
GAAGCATGCACTGTACTGTCAAGGCAAATTTGGGAAATTATTTTAGATGA
CTGAATCAGATTAGTAAGTACAGAAAAGACTCAGATACTTTATATATTTT
AGTTTGTAATGGGGAAAAGAAAAAAATATGTGTGAGGTGAAGCGTTTTTC
CATTCTGATTCTCATATTCCTGGAAACCAGGGATGTGGTGGGCACCCTCC
CAGTGCCCACTAGCCCCTCCCACACCCCTCTGCTGATAGGCTGTAGGGAT
CCAAATGTTCTGACTGCCCAGTGCATGGGAAAGAAATGCTGCGTCACCAA
GTGTGATGGCTGCCTCGAGCCGTCTTTATATTATAGAAGTGATGACCAGC
TAATAACCGAAGATATTTACCCATAAAATTCAGATGGGTCCAACCAGGCA
GAGGGGTACACCCTAAACAAGGGAAGCTCAGCGGGATTTCCAATTAGGGG
ATGAGATCTTGTGTAGGAAAACAGAAAAAGGAGATAGGAGAAAAG

Query= MSMg01no516_l13.g1 MSMg01no516_l13.g1 CHROMAT_FILE:
MSMg01no516_l13.g1 PHD_FILE: MSMg01no516_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:34 2005
         (612 letters)



>mm_chr18_39473643_39474654
          Length = 1012

 Score = 1152 bits (596), Expect = 0.0
 Identities = 608/612 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcaaagttcccccaagggtacaaaagtgctgagagccaggacaatccttttctccaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 cttcaaagttcccccaagggtacaaaagtgctgagagccaggacaatccttttctccaga 753

                                                                       
Query: 61  ttctgaacacccacatacccacaaagtagagtgccagaaggcatctgaggacagctaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ttctgaacacccacatacccacaaagtagagtgccagaaggcatctgaggacagctaact 693

                                                                       
Query: 121 cagataaaatccattcattcagactcttaattataaaccctgaagtttgaagcatgcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 cagataaaatccattcattcagactcttaattataaaccctgaagtttgaagcatgcact 633

                                                                       
Query: 181 gtactgtcaaggcaaatttgggaaattattttagatgactgaatcagattagtaagtaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gtactgtcaaggcaaatttgggaaattattttagatgactgaatcagattagtaagtaca 573

                                                                       
Query: 241 gaaaagactcagatactttatatattttagtttgtaatggggaaaagaaaaaaatatgtg 300
           |||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||
Sbjct: 572 gaaaagactcagatactttatatattttagttcgtaatggagaaaagaaaagaatatgtg 513

                                                                       
Query: 301 tgaggtgaagcgtttttccattctgattctcatattcctggaaaccagggatgtggtggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tgaggtgaagcgtttttccattctgattctcatattcctggaaaccagggatgtggtggg 453

                                                                       
Query: 361 caccctcccagtgcccactagcccctcccacacccctctgctgataggctgtagggatcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 caccctcccagtgcccactagcccctcccacacccctctgctgataggctgtagggatcc 393

                                                                       
Query: 421 aaatgttctgactgcccagtgcatgggaaagaaatgctgcgtcaccaagtgtgatggctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aaatgttctgactgcccagtgcatgggaaagaaatgctgcgtcaccaagtgtgatggctg 333

                                                                       
Query: 481 cctcgagccgtctttatattatagaagtgatgaccagctaataaccgaagatatttaccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cctcgagccgtctttatattatagaagtgatgaccagctaataaccgaagatatttaccc 273

                                                                       
Query: 541 ataaaattcagatgggtccaaccaggcagaggggtacaccctaaacaagggaagctcagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ataaaattcagatgggtccaaccaggcagaggggtacaccctaaacaagggaagctcagc 213

                       
Query: 601 gggatttccaat 612
           || |||||||||
Sbjct: 212 ggaatttccaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)