Query= MSMg01no516_o07.b1 MSMg01no516_o07.b1 CHROMAT_FILE:
MSMg01no516_o07.b1 PHD_FILE: MSMg01no516_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:48 2005
(543 letters)
>mm_chr18_53542283_53543224
Length = 942
Score = 988 bits (511), Expect = 0.0
Identities = 520/523 (99%), Gaps = 1/523 (0%)
Strand = Plus / Minus
Query: 21 agcatggctttgccaggactgtctgctacaagatggagatgaagactcgggagggatgct 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 agcatggctttgccaggactgtctgctacaagatggagatgaagactcgggagggatgct 683
Query: 81 tctcactataagcacagggatgagagagcggtacctcaaccaagagcttaggtgtggcca 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tctcactataagcacagggatgagagagcggtacctcaaccaagagcttaggtgtggcca 623
Query: 141 gactgccctgtggtatctgctagaacaacccgtttcttgaagagtaactttaaaaacaca 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gactgccctgtggtatctgctagaacaacccgtttcttgaagagtaactttaaaaacaca 563
Query: 201 cccacaggtaagctggcagttcttacccacagctttctgctttcggtagagagggcaagt 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cccacaggtaagctggcagttcttacccacagctttctgctttcggtagagagggcaagt 503
Query: 261 gccgtacattgaggaagtcaaggaagagtttgggaagctcttcattctccaaaatgacgg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gccgtacattgaggaagtcaaggaagagtttgggaagctcttcattctccaaaatgacgg 443
Query: 321 ccttgtgaaagcagaaagaaagaattagaaatgggaggggcgtctcttaggccaccaatc 380
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cc-tgtgaaagcagaaagaaagaattagaaatgggaggggcgtctcttaggccaccaatc 384
Query: 381 aaaagaacgctatcaaaaagtcataactgtccatcaaagtccgccccggcaacgttcctc 440
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 383 aaaagaacgctatcaaaaagtcataactgtccatcaaagtccgccccagcaacgttcctc 324
Query: 441 acaactgatctgaggagtggtctccaggccacccatcacaggtgcaggctggcgtccatc 500
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acaacttatctgaggagtggtctccaggccacccatcacaggtgcaggctggcgtccatc 264
Query: 501 tatacagtatgcgtacaccctgcactttatctactccttcagt 543
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tatacagtatgcgtacaccctgcactttatctactccttcagt 221
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 942
Length adjustment: 10
Effective length of query: 533
Effective length of database: 932
Effective search space: 496756
Effective search space used: 496756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_o07.g1 MSMg01no516_o07.g1 CHROMAT_FILE:
MSMg01no516_o07.g1 PHD_FILE: MSMg01no516_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:48 2005
(627 letters)
>mm_chr18_53380714_53381740
Length = 1027
Score = 1143 bits (591), Expect = 0.0
Identities = 621/637 (97%), Gaps = 10/637 (1%)
Strand = Plus / Plus
Query: 1 aggagtggtcacaggccccaataagctcactttaacatctggtgtgtgtggtgttgagtt 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 191 aggagtggtcacaggccccaataagctcactttaacgtctggtgtgtgtggtgttgagtt 250
Query: 61 tccattgcctctctggctgtctatgttctcttggtccaccatcacgaactgattccagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tccattgcctctctggctgtctatgttctcttggtccaccatcacgaactgattccagta 310
Query: 121 ctccaggggcagagagaacaggcg----------ctccaccaccttgagctgacgtttga 170
|||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 311 ctccaggggcagagagaacaggcgagaacaggcgctccaccaccttgagctgacgtttga 370
Query: 171 tgtcctggaacattgtcactggatctggattgggcacagtatgggcaactattgtagggc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgtcctggaacattgtcactggatctggattgggcacagtatgggcaactattgtagggc 430
Query: 231 caaagactttagctagattggcaatatccatcttagtgtctggactctgagacactctct 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 caaagactttagctagattggcaatatccatcttagtgtctggactctgagacactctct 490
Query: 291 gtaggtggatcataaggaaggctagcgtgtccctgttggcctggggcagctcactgacag 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gtaggtggatcataaggaaggctagcgtgtccctgttggcctggggcagctcactgacag 550
Query: 351 cctggtacacggcggctgtgctgttgtctttatctgttatctctgctacctccatgaagg 410
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cctggtacatggcggctgtgctgttgtctttatctgttatctctgctacctccatgaagg 610
Query: 411 ctttgctcagccaaaaggtcaggaggggctctttgaggttgcgcaggaagtccttcagga 470
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 611 ctttgctcagccaaaaggtcaggaggggctctttgaggttgcacaggaagtccttcaggg 670
Query: 471 ggctgcagatgacgtggatatcgtccactttgctgaggaggggtacagttttcaccttaa 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ggctgcagatgacgtggatatcgtccactttgctgaggaggggtacagttttcaccttaa 730
Query: 531 ggaatttctctttcagttctttcgctgtctggtcacagcctgagatcctgtacaaacctg 590
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 731 ggaatttctctttcagttctttcactgtccggtcacagcctgagatcctgtacaaacctg 790
Query: 591 cctcagtcaggcctcgctgctcgatctcattgacaca 627
|||||||||||||||||||||||||||||||||||||
Sbjct: 791 cctcagtcaggcctcgctgctcgatctcattgacaca 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
