Query= MSMg01no517_k23.b1 MSMg01no517_k23.b1 CHROMAT_FILE:
MSMg01no517_k23.b1 PHD_FILE: MSMg01no517_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:51 2005
(552 letters)
>mm_chr18_85835559_85836510
Length = 952
Score = 1017 bits (526), Expect = 0.0
Identities = 544/550 (98%), Gaps = 2/550 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgtattcttggacagccctgctaagtttaaccaataggatcctcaattagatt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ggaattctgtattcttggacagccctgctaagtttaaccaataggatcctcaattagatt 693
Query: 64 tctgatgtcatagtttggaatctttgttgtccccagtgtattctgagactagactattca 123
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 692 tctgatgtcatagtttggaatctttgttgtccccaatgtattctgagactagactattca 633
Query: 124 gtagacagggatctcagcttctgtccctctatcaattaaatctaccacacaacaaaccag 183
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 632 gtagacagggatctcagcttctgtccctctatcaactaaatctaccacacaacaaaccag 573
Query: 184 gtatatttgtacacttagctaatgatggtcatcataacatcttgagttttgattggctta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gtatatttgtacacttagctaatgatggtcatcataacatcttgagttttgattggctta 513
Query: 244 gaaaagactaaccctgctcaccatttttcaggagacatctgctgaaacaattctacttag 303
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaaaagactaaccctgctcatcatttttcaggagacatctgctgaaacaattctacttag 453
Query: 304 acaatagccaataactatttggaagagttaaaccatctaacttttaat-tataggatgcc 362
||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||
Sbjct: 452 acaatagccaataactatttggaagagttaaaccatctaactttt-atctatgggatgcc 394
Query: 363 tttattttctcaattataaatttcccattaaaatagctaaaaacaatttgttgccgctgt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tttattttctcaattataaatttcccattaaaatagctaaaaacaatttgttgccgctgt 334
Query: 423 actataaaatattggcaagatttatttgcttcctactaccacattaatatatctaagttc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 actataaaatattggcaagatttatttgcttcctactaccacattaatatatctaagttc 274
Query: 483 tccttctctcaccctctatcttttaaatgagaattattgctttaatataatgaaaagttc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tccttctctcaccctctatcttttaaatgagaattattgctttaatataatgaaaagttc 214
Query: 543 atagtggtag 552
||||||||||
Sbjct: 213 atagtggtag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_k23.g1 MSMg01no517_k23.g1 CHROMAT_FILE:
MSMg01no517_k23.g1 PHD_FILE: MSMg01no517_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:51 2005
(486 letters)
>mm_chr18_85693681_85694567
Length = 887
Score = 895 bits (463), Expect = 0.0
Identities = 481/487 (98%), Gaps = 1/487 (0%)
Strand = Plus / Plus
Query: 1 acaccccttccgtgctgctaggaacatccagccgtgggtgtgtcacagggactaggagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaccccttccgtgctgctaggaacatccagccgtgggtgtgtcacagggactaggagat 260
Query: 61 gagatgtgtggtccatatggaacattgacagctggctcctggatggcccattagctccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagatgtgtggtccatatggaacattgacagctggctcctggatggcccattagctccaa 320
Query: 121 ctcagttttgtagctttcttcattctccaatcatcattcctcagagaagttattatctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcagttttgtagctttcttcattctccaatcatcattcctcagagaagttattatctct 380
Query: 181 aatgctactttaattaaaaaaaaa-ttcccctaaccaatacagaatccgttttggcatcg 239
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgctactttaattaaaaaaaaaattcccctaaccaatacagaatccgttttggcatcg 440
Query: 240 ataatctgacctgattttatctctaacctctcctgtatattgggctgattacaatgtaaa 299
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 ataacctgacctgattttatctctaacctttcctgtatattgggctgattacaatgtaaa 500
Query: 300 ttttttatgatatagggcttgtttactagtatgttctcttaataccctgatttctataaa 359
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 ttttttatgatataggggttgtttactagtatgttctcttaataccttgatttctataaa 560
Query: 360 gttactttggccctagaaactgaaaatttcccttttaactaatgggcattcattttatga 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 gttactttggccctagaaactgaaaatttcccttttaactaatggtcattcattttatga 620
Query: 420 atttgatagcattatattccatgaagagacttcacttagtcataaataaaatgtgatgaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttgatagcattatattccatgaagagacttcacttagtcataaataaaatgtgatgaa 680
Query: 480 caaaagc 486
|||||||
Sbjct: 681 caaaagc 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 887
Length adjustment: 10
Effective length of query: 476
Effective length of database: 877
Effective search space: 417452
Effective search space used: 417452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
