BAC Information

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BAC

Clone NameMSMg01-518F23
Chromosome18 (Build37)
Map Location 35,211,089 - 35,211,766
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954
Downstream geneLOC100041951, Ctnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518F23.T7 (MSMg01no518_f23.b1)MSMg01-518F23.TJ (MSMg01no518_f23.g1)
ACCAG589897AG589898
length740764
length of high quality
(start - end)		683 (53 - 735)621 (80 - 700)
definitionCHROMAT_FILE: MSMg01no518_f23.b1 PHD_FILE: MSMg01no518_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:45 2005CHROMAT_FILE: MSMg01no518_f23.g1 PHD_FILE: MSMg01no518_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTATGTTGACCAGGCTAGCCTCAGACTTGAAGCGATC
TGACTGCCTCTTTCTCCTGAATGCTAAGATTAAAGATATGCAGCTCCCAG
CTCATTTTTTACATTAGACTTCCAGGCTTCCTGACCTGAGCTACTCTGAA
CCTAAAGAAATCACCTCTGAGCTCTAAGTTCCAGGGGATCCAGTCATAAA
AGCCTGCTGGTTTACTCGGGTGGCTGCTCCATCCTTCTCCCCCCACTCCC
ACCTCCAAGGCCGGGCATTAGGTTTTCCCAGAGAACACATGCTCCAGTAA
AGAACTGCTATTTTAACTTGCTTAGTATCCACACTTTTTGGCACAACCTT
TGTAGGTTTTGGTTGAGGACATTGTTTTAGCATACCCTACCCCTGCCCTC
CCCCCACACACACACTTTCTCTTACCAGGCATTGACCGTGCGGTTTACAT
GCTAAGGATGGGCTGAACCATTAAGTTATAATCCCGCCCACATGTGACTT
TATATCTGAGGTTCATATCTGATCCCCTGGCTTGGAGCTTGGACTCCAAA
CTCATTTGGAGGGTTGCGGGGATGGGGACCGGTCAGTGGCAGAGCATTTG
CCTAGCACATAGAAGCCCTGGTTTGGTTTTGTTTTTTTTTCTCCCTGACA
CAACAAACAATACCTTATCAGGTCTTGGAGTGAGAGGAGA

NGGCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACACACACAGAAAGAAAAGAT
AGAGAAGCAGGTTCTAAAAGACCTAAGTTCAAGAGCCTGCTTAAAGGCCC
TCCCTCTGACCGTAAAGTAAGCAAGACTGGGCATCTTCCTCAACCACCTC
CAGCCTTCCTCACTGAGGCATGGCCTCCACTGAGTCCACTCTGGACATCT
TTCTTCTATCCTTGCCTTCCCAATGCTGGAATTACATGGGTACACTACAC
CCATCCAACATTTACGCAGGTTGAGAAGATACAAATTCCAAGACCCACAC
TTACAATACAAGCACTTTAACCTTCTCCCCAGCCCAGTAAAATTGCAATA
AGCTTTTTATCTGCAAAAATAAAAGGAAATCATCATGATCATCAGCAGCA
ATCAGCAAAACTTGAACAAGATCAGCAAGATGACTCAGCCGATCAACGTA
CTTGTCACCATCCCTGGCCAGCTGAATTTGATTCCTGAAAACTACATAAT
GGAAGGAGAGAACCAGCACTCACAAGTTGAACTATGAACTCCACGTGTAT
GCATACATGCTTCCCCCTATAACATATAAAATAAGTACAAATAATTAAAA
AAAATGAGAGAGAGAGAACGAACACGTGAGCATTCCAGGCTATCCCGGGC
TATCCAGTGAGACCCTATCAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA
GGAAGGAAAGAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_f23.b1 MSMg01no518_f23.b1 CHROMAT_FILE:
MSMg01no518_f23.b1 PHD_FILE: MSMg01no518_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:45 2005
         (683 letters)



>mm_chr18_35210885_35211965
          Length = 1081

 Score = 1230 bits (636), Expect = 0.0
 Identities = 669/680 (98%), Gaps = 3/680 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactatgttgaccaggctagcctcagacttgaagcgatctgactgcctctttctc 64
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactatgtagagcaggctagcctcagacttgaagcgatctgactgcctctttctc 264

                                                                       
Query: 65  ctgaatgctaagattaaagatatgcagctcccagctcattttttacattagacttccagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgaatgctaagattaaagatatgcagctcccagctcattttttacattagacttccagg 324

                                                                       
Query: 125 cttcctgacctgagctactctgaacctaaagaaatcacctctgagctctaagttccaggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttcctgacctgagctactctgaacctaaagaaatcacctctgagctctaagttccaggg 384

                                                                       
Query: 185 gatccagtcataaaagcctgctggtttactcgggtggctgctccatccttctccccccac 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 gatccagtcataaaagcctgctggtttactcggggggctgctccatccttctccccccac 444

                                                                       
Query: 245 tcccacctccaaggccgggcattaggttttcccagagaacacatgctccagtaaagaact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcccacctccaaggccgggcattaggttttcccagagaacacatgctccagtaaagaact 504

                                                                       
Query: 305 gctattttaacttgcttagtatccacactttttggcacaacctttgtaggttttggttga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctattttaacttgcttagtatccacactttttggcacaacctttgtaggttttggttga 564

                                                                       
Query: 365 ggacattgttttagcataccctacccctgccctccccccacacacacactttctcttacc 424
           ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 565 ggacattgttttagcataccctacccctgccctcccccccc-c-cacactttctcttacc 622

                                                                       
Query: 425 aggcattgaccgtgcggtttacatgctaaggatgggctgaaccattaagttataatcccg 484
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aggcattgaccatgcggtttacatgctaaggatgggctgaaccattaagttataatcccg 682

                                                                       
Query: 485 cccacatgtgactttatatctgaggttcatatctgatcccctggcttggagcttggactc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 683 cccacatgtgactttatatctgaggttcatatctgatcccctggcttggagcttggattc 742

                                                                       
Query: 545 caaactcatttggagggttgcggggatggggaccggtcagtggcagagcatttgcctagc 604
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 743 caaactcatttggagggttgtggggatggggaccggtcagtggcagagcatttgcctagc 802

                                                                       
Query: 605 acatagaagccctggtttggttttgttttttttt-ctccctgacacaacaaacaatacct 663
           ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 803 acatagaagccctggtttggtttggttttttttttctccctgacacaacaaacaatacct 862

                               
Query: 664 tatcaggtcttggagtgaga 683
           ||||||||||||||||||||
Sbjct: 863 tatcaggtcttggagtgaga 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1081
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1071
Effective search space:   720783
Effective search space used:   720783
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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