Query= MSMg01no518_i17.b1 MSMg01no518_i17.b1 CHROMAT_FILE:
MSMg01no518_i17.b1 PHD_FILE: MSMg01no518_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:58 2005
(324 letters)
>mm_chr18_23641021_23641741
Length = 721
Score = 456 bits (236), Expect = e-133
Identities = 283/320 (88%), Gaps = 34/320 (10%)
Strand = Plus / Plus
Query: 5 gaattccattttgtaagcacaatagatttttgcaggagtcctgagctttgttccctaatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gaattccattttgtaagcacaatagatttttgcaggagtcctgagctttgttccctaatg 295
Query: 65 gttgaccattgcttagacaagatcatctcctttccttttttttttttttttttttttttt 124
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gttgaccattgcttagacaagatcatctcctttccttttttttttttt------------ 343
Query: 125 gctttgacatacatgggttctcctgcccagacgcttctcccatccacacttttctcaaaa 184
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 -------------------ctcctgcccagacgcttctcccatccacacttttctcaaaa 384
Query: 185 cgtccctttggtacctatatgcattcttcagcaacatcacgatcctgtagagctgtgacc 244
||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 385 cgtcccttt---acctatatgcattcttcagcaacatcatgatcctgtagaactgtgacc 441
Query: 245 gctactctttcacagagactattgaagccaacagttggcaatcttacctacgatttataa 304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 442 gctactctttcacagagactattgaggccaacagttggcaatcttacctacgatttataa 501
Query: 305 gcctctagtgccatcattag 324
||||||||||||||||||||
Sbjct: 502 gcctctagtgccatcattag 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 721
Length adjustment: 9
Effective length of query: 315
Effective length of database: 712
Effective search space: 224280
Effective search space used: 224280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_i17.g1 MSMg01no518_i17.g1 CHROMAT_FILE:
MSMg01no518_i17.g1 PHD_FILE: MSMg01no518_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:58 2005
(664 letters)
>mm_chr18_23808248_23809313
Length = 1066
Score = 1166 bits (603), Expect = 0.0
Identities = 650/669 (97%), Gaps = 8/669 (1%)
Strand = Plus / Minus
Query: 1 tctgttttccaccaccaaattgtttgttgaaaggtggtcccggtctgtggcaagcaagga 60
||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||
Sbjct: 866 tctgttttccaccaccaaattatttgttggaaggtggtcccggtgtgtggcaagcaagga 807
Query: 61 atagcaggttaaaagtgtggaggcctttcacaggcttgggttttaggattggggcacaga 120
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 806 agagcaggttaaaagtgtggaggcctttcataggcttgggttttaggattggggcacaga 747
Query: 121 tgtgttaggttgctactataaaatgtataacaataaaagcgagaaaataatgacaattaa 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 746 tgtgttaggttgctactataaaatgtataacaataaaagcaagaaaataatgacaattaa 687
Query: 181 tttactattttgaataacatatcaagcaattctaaattttataggaaaggacaagaaagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tttactattttgaataacatatcaagcaattctaaattttataggaaaggacaagaaagc 627
Query: 241 aaactaaaaatagaagtggtcacaggctgccgttttaaatgatggtctaactattttgtt 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 626 aaactaaaaatagaagtggtcacaggctgccgttttaaatgatggtctaagtattttgtt 567
Query: 301 ctgctcttacaggcttctgcttcacagatggcattcaaaacagatctcttcctaactctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 566 ctgctcttacaggcttctgcttcacagatggcattcaaaacagatctcttcataactctg 507
Query: 361 ttacttctggtctttcactcgttacttagaatgagagccagagcaccaggaggacttctg 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 506 ttacttctggtctttcactcgttacttagaatgagagccagagcaccagaaggacttctg 447
Query: 421 gctagtttcttcaccggcaccgtaaaacagtcagtttcttttgtagactagtttgaagta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gctagtttcttcaccggcaccgtaaaacagtcagtttcttttgtagactagtttgaagta 387
Query: 481 cttttcgaattacgcatt----atccttctgttggaattttagtgcctccagccctggac 536
||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct: 386 cttttcgcattac---ttttccatccttctgttggaattttagtgcctccacccctggac 330
Query: 537 cacatttatctggaccttgtcctctacctcacttccttctcctcttctcaggttgggctc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cacatttatctggaccttgtcctctacctcacttccttctcctcttctcaggttgggctc 270
Query: 597 ttcagctagtccccaatttccccctagtttcctctgcagatggacagtcacagcaagcct 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttcagctagtccccaatttccccctagtttcctctgcagatggacagtcacagcaagcct 210
Query: 657 c-tgggagt 664
| |||||||
Sbjct: 209 cgtgggagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1066
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1056
Effective search space: 690624
Effective search space used: 690624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
