Query= MSMg01no518_j21.b1 MSMg01no518_j21.b1 CHROMAT_FILE:
MSMg01no518_j21.b1 PHD_FILE: MSMg01no518_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:04 2005
(641 letters)
>mm_chr18_77074876_77075915
Length = 1040
Score = 1154 bits (597), Expect = 0.0
Identities = 630/641 (98%), Gaps = 2/641 (0%)
Strand = Plus / Minus
Query: 1 tctaagagggacttgcattactccatttaaaaaaaattagcatctattaactgtataaag 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 659 tctaagagggacttgcattactccattttaaaaaaattagcatctattaactgtataaag 600
Query: 61 taatagggtttgttttgatgctttcatccacatctaatgtacttgctatttgtcccagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 taatagggtttgttttgatgctttcatccacatctaatgtacttgctatttgtcccagtt 540
Query: 121 tgatcgtatttacctcaactatgaccattttcctcttctcccttttaggacttgcatttt 180
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 539 tgatcgtatttacctcaactatgactgttttcctcttctcccttttaggacttgcatttt 480
Query: 181 tgttgctagttgcctgaccatgctcttaatcaaaatcattttgaaaacagcgctacagaa 240
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tgttgctagtcacctgaccatgctcttaatcaaaatcattttgaaaacagcgctacagaa 420
Query: 241 gtaccatgcacatgccataaatccaacccattcaaagtgtatatataattcaatcctcag 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gtaccatgcatatgccataaatccaacccattcaaagtgtatatataattcaatcctcag 360
Query: 301 tgttgacctactgccatcatggtctgtcttcaagtttttctgtaacttctgtaggtcccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgttgacctactgccatcatggtctgtcttcaagtttttctgtaacttctgtaggtcccc 300
Query: 361 ttgtctagttgtggtcattaagtgttttcaccccttggctccaagaattcacgagtctgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ttgtctagttgtggtcattaagtgttttcaccccttggctccaagaattcacgagtctgc 240
Query: 421 tcacttcttacatagatttatttttttggatatctcatacaaataaaatcatataatatg 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tcacttcttacatagattta-ttttttggatatctcatacaaataaaatcatataatatg 181
Query: 481 tagtttaatattttaatttttcttattttttgcatttggccttttaaaaatattttaatg 540
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 180 tagtttaagattttaatttttctta-tttttgcatttggccttttaaaaatattttaatg 122
Query: 541 agtttaagatttatccgtgttctcaggatcattttatgttcaaatctgaaatttattggg 600
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 121 agtttaagatttatctgtgttctcaggatcattctatgttcaaatctgaaatttattggg 62
Query: 601 ctgtataagtagcacaaattaggacccaaatcttgtgtaag 641
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgtataagtagcacaaattaggacccaaatcttgtgtaag 21
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1040
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1030
Effective search space: 649930
Effective search space used: 649930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_j21.g1 MSMg01no518_j21.g1 CHROMAT_FILE:
MSMg01no518_j21.g1 PHD_FILE: MSMg01no518_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:04 2005
(561 letters)
>mm_chr18_76945985_76946945
Length = 961
Score = 1031 bits (533), Expect = 0.0
Identities = 553/561 (98%), Gaps = 3/561 (0%)
Strand = Plus / Plus
Query: 1 cctcctgttctttaggcttctttgaatacttacagtgtgaacggccacaagacccaccct 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cctcctgtt---taggcttctttgaatacttacagtgtgaacggccacaagacccaccct 260
Query: 61 catcaccgataacttgccttcccagaatcctcctcggtggccctgccaccatcagcagcc 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcaccaataacttgccttcccagaatcctcctcggtggccctgccaccatcagcagcc 320
Query: 121 tataggtctattacaaccaccgctagaaaaaccatcctcagtctatcccagggccctgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataggtctattacaaccaccgctagaaaaaccatcctcagtctatcccagggccctgcc 380
Query: 181 ccaggctcccagcaagctctgtgccagttggcattgttgattatctttccagacttttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaggctcccagcaagctctgtgccagttggcattgttgattatctttccagacttttct 440
Query: 241 ctttccaggaattggtcacatccatccacaccctttccaccatctatgaagtgtcataac 300
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctgcaggaattggtcacatccatccacaccctttccaccatctatgaagtgtcataac 500
Query: 301 tagagtgcacataggtctctgtgcaagaagagcaggtttccactggctgccaccgccaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagagtgcacataggtctctgtgcaagaagagcaggtttccactggctgccaccgccaat 560
Query: 361 gtctcaatggaggcgaaatcctttgaactccttgagggaaatctgttcactcttcactca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtctcaatggaggcgaaatcctttgaactccttgagggaaatctgttcactcttcactca 620
Query: 421 agatttcggccccacccattgccctggtcccttgacaaactcatccatgtaccagtccct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agatttcggccccacccattgccctggtcccttgacaaactcatccatgtaccagtccct 680
Query: 481 ttacacaaactttatccacaaaccttgacaatgaactacagtctttcccctttttctctg 540
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 681 ttacacaaaccttatccacaaaccttgacaatgaactatagtctttcccctttttctctg 740
Query: 541 ttcctccctgttgcctgggag 561
|||||||||||||||||||||
Sbjct: 741 ttcctccctgttgcctgggag 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
