Query= MSMg01no518_k04.b1 MSMg01no518_k04.b1 CHROMAT_FILE:
MSMg01no518_k04.b1 PHD_FILE: MSMg01no518_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:06 2005
(636 letters)
>mm_chr18_36468099_36469134
Length = 1036
Score = 893 bits (462), Expect = 0.0
Identities = 468/470 (99%)
Strand = Plus / Minus
Query: 167 gccaggaaatatgtgctggagatatggctcagaggttaagagcactgactgctcttccag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 gccaggaaatatgtgctggagatatggctcagaggttaagagcactgactgctcttccag 977
Query: 227 aggtcctgagttcaattctcagcaaccacatggtggctcacaatcatctgtaatgaggtc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 aggtcctgagttcaattctcagcaaccacatggtggctcacaatcatctgtaatgaggtc 917
Query: 287 tggtgctctcttctggtgtgtctgaagacagcaactatgtattcatatacatataaataa 346
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 tggtgttctcttctggtgtgtctgaagacagcaactatgtattcatatacatataaataa 857
Query: 347 atcttttaaaaaaagaaagaaatatgtgccagccatgactgggcactagatgtatcacag 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 atcttttaaaaaaagaaagaaatatgtgccagccatgactgggcactagatgtatcacag 797
Query: 407 gaactataccctcaccattataccatcaataaataaaaatgtttaagcaaggaaatttga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gaactataccctcaccattataccatcaataaataaaaatgtttaagcaaggaaatttga 737
Query: 467 acagtggtaagcactaggcagcaccttgaggagaatgacggaaaattttcagtttgggtt 526
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 atagtggtaagcactaggcagcaccttgaggagaatgacggaaaattttcagtttgggtt 677
Query: 527 gtcacaagagacctctgaggagccagcactggagctgaggcctgctatcagggggacaat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gtcacaagagacctctgaggagccagcactggagctgaggcctgctatcagggggacaat 617
Query: 587 catgaaagggggacaagcatgtgagagtgtgggggaggtgcattccagga 636
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 catgaaagggggacaagcatgtgagagtgtgggggaggtgcattccagga 567
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_k04.g1 MSMg01no518_k04.g1 CHROMAT_FILE:
MSMg01no518_k04.g1 PHD_FILE: MSMg01no518_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:06 2005
(680 letters)
>mm_chr18_36295489_36296567
Length = 1079
Score = 1239 bits (641), Expect = 0.0
Identities = 669/681 (98%), Gaps = 7/681 (1%)
Strand = Plus / Plus
Query: 1 tcagtgcttggagaactgggaccagattggagtcctttctgttctggctcag-ggagaga 59
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tcagtgcttggagaactgggaccagattggagtcctttctgttctggctcagaggagaga 260
Query: 60 tcataaaatgtcagtaattctttatttctttccaagtaattactgctttacaacttccag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcataaaatgtcagtaattctttatttctttccaagtaattactgctttacaacttccag 320
Query: 120 gtagtattacattatacttccacttccacccctccatgtgctttgtggttccttggtcca 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gtagtattacattatacttccacttccacccctccatgtactttgtggttccttggtcca 380
Query: 180 gtgggcaaatgctaggctctgaagaccagacattcacatcgtcaatgtagtcatagctgg 239
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgggcaaatgctaggctctgaaaaccagacattcacatcgtcaatgtagtcatagctgg 440
Query: 240 tgaaggaggaatcttgcccaaggccagagaatgatttgcctccaagagacactgaccaca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaggaggaatcttgcccaaggccagagaatgatttgcctccaagagacactgaccaca 500
Query: 300 caagggtccgtgcccttcccagtgcttctccctcttgcctctcccacatcgctttagtga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagggtccgtgcccttcccagtgcttctccctcttgcctctcccacatcgctttagtga 560
Query: 360 gttggctcccattgctgccaggccaagcccagttcactaggggattagccctccctggca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttggctcccattgctgccaggccaagcccagttcactaggggattagccctccctggca 620
Query: 420 gctcagtagcacactctgtttatgacactgggtgtcataaacagaatgtgctgtagatag 479
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctcagtagcacact--gtttatgacactgggtgtcataaacagaatgtgctgtagatag 678
Query: 480 ggaggagccattcttaaaggcattccttcttgagtcttgtgttggtcacacccttggggg 539
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ggaggagccactcttaaaggcattccttcttgagtcttgtgttggtcacacccttggggg 738
Query: 540 caagcacatggttccaaatagtctcttcctcatttccacagccctggatttggaagaaat 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 caagcacatggttccaaatagtctcttcctcatttccacagccctggatttggaagaaat 798
Query: 600 atgtgaggattgatccaaggcatccaataccattcccgtgtatgtatgtatgtatatatg 659
||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
Sbjct: 799 atgtgaggattgatccaaggcattcaataccattcctgtgtatgtatgtatgtat----g 854
Query: 660 tgtgtacatgcatatatatgt 680
|||||||||||||||||||||
Sbjct: 855 tgtgtacatgcatatatatgt 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1079
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1069
Effective search space: 716230
Effective search space used: 716230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
