Query= MSMg01no518_l04.b1 MSMg01no518_l04.b1 CHROMAT_FILE:
MSMg01no518_l04.b1 PHD_FILE: MSMg01no518_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:11 2005
(710 letters)
>mm_chr18_12739814_12740925
Length = 1112
Score = 1164 bits (602), Expect = 0.0
Identities = 617/622 (99%), Gaps = 2/622 (0%)
Strand = Plus / Minus
Query: 4 ggaattctcttctccttactc-aacattaggacaccttagctgttgggttgagaa-acat 61
||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||
Sbjct: 622 ggaattctcttctccttactcaaacattgggacaccttagctgttgggttgagaagacat 563
Query: 62 caagagctgctgggccctaacatggggtataaacttgggactagagttatttacctggga 121
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 562 caagagctgctgggccctaacatggggtgtaaagttgggactagagttatttacctggga 503
Query: 122 cgcctccaatgtgtagtgaccctcgggtgctgttcggtgggaaggaaagctgcccagctg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cgcctccaatgtgtagtgaccctcgggtgctgttcggtgggaaggaaagctgcccagctg 443
Query: 182 tgtagctattgtctgtatccagttccagatgcagagtgtgctgtttaatggagactggat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgtagctattgtctgtatccagttccagatgcagagtgtgctgtttaatggagactggat 383
Query: 242 gaaaggaagctggttagttctgacatgtgcacccccttgtcaccattgtctttgtttgaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gaaaggaagctggttagttctgacatgtgcacccccttgtcaccattgtctttgtttgaa 323
Query: 302 ctcattcccactagaccctgggggcactgtttgaaggcacttgctctgccctgggtagaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctcattcccactagaccctgggggcactgtttgaaggcacttgctctgccctgggtagaa 263
Query: 362 atgcaacaccctattcagcagtagccattactaaattgtatccctacgatgaatccatag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atgcaacaccctattcagcagtagccattactaaattgtatccctacgatgaatccatag 203
Query: 422 ggttgaggaggcagctgagttggtttagtgcctgccgtacaagtgtgaagatctgggttc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggttgaggaggcagctgagttggtttagtgcctgccgtacaagtgtgaagatctgggttc 143
Query: 482 aagctctcagaccgcctgaaaaccaaacaatgccaagtgtggaggtggactgttgcaatc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 aagctctcagaccgcctgaaaaccaaacaatgccaagtgtggaggtggactgttgcaatc 83
Query: 542 tcagtgcctgggaggcagagacaggcagattcctgtgtcctgctcaccagccagcccaga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 tcagtgcctgggaggcagagacaggcagattcctgtgtcctgctcaccagccagcccaga 23
Query: 602 ctatgagtgaaacccaggccag 623
||||||||||||||||||||||
Sbjct: 22 ctatgagtgaaacccaggccag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1112
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1102
Effective search space: 771400
Effective search space used: 771400
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no518_l04.g1 MSMg01no518_l04.g1 CHROMAT_FILE:
MSMg01no518_l04.g1 PHD_FILE: MSMg01no518_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:11 2005
(671 letters)
>mm_chr18_12608296_12609366
Length = 1071
Score = 1266 bits (655), Expect = 0.0
Identities = 669/678 (98%), Gaps = 7/678 (1%)
Strand = Plus / Plus
Query: 1 ctaccttgactgtctgtggctgactttcaaggatggaggactctcaagacaatttgtctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ctaccttgactgtctgtggctgactttcaaggatggaggactctcaagacaatttgtctt 253
Query: 61 gagaacttggccagatattgtgttgacacttgcagtgaacctcaggtggtgctgtttcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gagaacttggccagatattgtgttgacacttgcagtgaacctcaggtggtgctgtttcta 313
Query: 121 cttcttttctacaaggttggttcatttacaaactgcatatgtgggaatggaggctgtgtg 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 314 cttcttttctacaaggttggttcatttacaaactgcctatgtgggaatggaggctgtgtg 373
Query: 181 ctaatattgactaacactgaggcttagccatcttgaagtatatataatctataatataga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctaatattgactaacactgaggcttagccatcttgaagtatatataatctataatataga 433
Query: 241 ttatatataagtatatata-------atataatatatttatgtttgggccatccctgcct 293
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 434 ttatatataagtatatataatataatatataatatatttatgtttgggccatccctgcct 493
Query: 294 gatacagggtctgggagaggaaagaagcagcccacacagttgtcttctcttgtagaggga 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gatacagggtctgggagaggaaagaagcagcccacacagttgtcttctcttgtagaggga 553
Query: 354 aacatctgtcagcgagacagtttggtagtaaccccaactgtttcttgactttcagggtgt 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 aacatctgtcagcgagacagtttggtagtaaccccaactgtttcttgactttcagggtgt 613
Query: 414 cagtgtgacattggtggagcactcaccaccatgtgtagtgggccctcgggagtatgccag 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cagtgtgacattggtggagcactcaccaccatgtgtagtgggccctcgggagtatgccag 673
Query: 474 tgcagagagcacgtggaggggaaacagtgccagaggtgagtcttcgagaagtgtctttac 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tgcagagagcacgtggaggggaaacagtgccagaggtgagtcttcgagaagtgtctttac 733
Query: 534 acactcaagctaccaaggccatctccccctttcccatctgtagcaatcctaaggaggcag 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 acactcaagctaccaaggccatctccccctttcccatctgtagcaatcctaaggaggcag 793
Query: 594 atgaagcagtcagtataattggaacctgaacatgtgaccacaagctaattagaataggtc 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 atgaagcagtcagtataattggaacctgaacatgtgaccacaagctaattagaataggtc 853
Query: 654 attacnatgtccataaag 671
||||| ||||||||||||
Sbjct: 854 attacaatgtccataaag 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
