Query= MSMg01no518_m19.b1 MSMg01no518_m19.b1 CHROMAT_FILE:
MSMg01no518_m19.b1 PHD_FILE: MSMg01no518_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:19 2005
(715 letters)
>mm_chr18_33609886_33611000
Length = 1115
Score = 1338 bits (692), Expect = 0.0
Identities = 707/712 (99%)
Strand = Plus / Plus
Query: 4 ggaattcttcataatgctctggtgtttctatttgcctcccttttcccttgctgaagatga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcataatgctctggtgtttctatttgcctcccttttcccttgctgaagatga 263
Query: 64 gtccggggccttgtggttgctaaacattcattctaccattgagcttcataaccccgtcta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtccggggccttgtggttgctaaacattcattctaccattgagcttcataaccccgtcta 323
Query: 124 tatgtgtgtttttaaaaagctgaaggtatgtgcatttatttatggagttagtggtactgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatgtgtgtttttaaaaagctgaaggtatgtgcatttatttatggagttagtggtactgg 383
Query: 184 ggagagggcccagtaccttatgcatgcctggccagcatttcaccacagtttcaccccagt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggagagggcccagtaccttatgcatgcctggccagcatttcaccacagtttcaccccagt 443
Query: 244 accaggctctaatcaataatttattcctcaccattttattgtaaggatgtgagggactga 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 444 accaggctctaatcaataatttattcctcaccattttattgtaaggatgtgaggaactga 503
Query: 304 cacacagtaagtgtgccagggacaagcacagaagtgggtgctcctgggaccaccctcctc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cacacagtaagtgtgccagggacaagcacagaagtgggtgctcctgggaccaccctcctc 563
Query: 364 ccacataccatatgtagatgcaaacactgagggaaagttggtttctgttccagggtcaca 423
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 564 ccacatatcatatgtagatgcaaacactgagggaaagttggtatctgttccagggtcaca 623
Query: 424 cagccaatggagaaggcagatgtcccatgttcacagacctgcctgtcagtactgacactg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cagccaatggagaaggcagatgtcccatgttcacagacctgcctgtcagtactgacactg 683
Query: 484 tgtgcctggagtgagacctggaatgtctccctgaagcccttttgagagttgaggcccact 543
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgtgcatggagtgagacctggaatgtctccctgaagcccttttgagagttgaggcccact 743
Query: 544 tttaaccccaagggtgctggcaccccctctgagtgccctgaagttgaattttagatttcg 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 744 tttaaccccaagggtgctggcaccccctctgagtgccctgaagttgaattttagatctcg 803
Query: 604 gacacccactgtcaaaagtaattttctcaaattatctgttgtttctaaaacccatttcca 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gacacccactgtcaaaagtaattttctcaaattatctgttgtttctaaaacccatttcca 863
Query: 664 gtataaacagtggctccttcaaatagaacttactttaaaaggggagggggaa 715
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gtataaacagtggctccttcaaatagaacttactttaaaaggggagggggaa 915
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 715
Length of database: 1115
Length adjustment: 10
Effective length of query: 705
Effective length of database: 1105
Effective search space: 779025
Effective search space used: 779025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no518_m19.g1 MSMg01no518_m19.g1 CHROMAT_FILE:
MSMg01no518_m19.g1 PHD_FILE: MSMg01no518_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:19 2005
(658 letters)
>mm_chr18_33769598_33770657
Length = 1060
Score = 667 bits (345), Expect = 0.0
Identities = 369/381 (96%), Gaps = 9/381 (2%)
Strand = Plus / Minus
Query: 1 tttgta-tttttattaccattccattaatttttgacaatatttatttccatttagtacat 59
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgtattttttattaccattccattaatttttgacaatatttatttccatttagtacat 322
Query: 60 tagcttttttatttgtttttgga-tttcttttctcttcttatttttccaagacccaatat 118
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 321 tagcttttttatttgtttttggatttttttttctcttcttatttttccaagacccaatat 262
Query: 119 tatttacttgagaattctttcaggagtcatttttatagatcattatttgagattgctcta 178
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 tatttacttgagaattctttcaggagtcatttttatagatcattaattgagattgctcta 202
Query: 179 tttctattt-------tattttattttattttatttttaaatgaagcccccctcatagtg 231
||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tttctatttctatttctattttattttattttatttttaaatgaagaccccctcatagtg 142
Query: 232 gtaaacttctcttttaggattgttttaattgtatcacaaaggttttggtataatgtgttt 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gtaaacttctcttttaggattgttttaattgtatcacaaaggttttggtataatgtgttt 82
Query: 292 tcattttgatttgatcctagaaaaattaaaaaaaattcacaatgacccattcactattta 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 tcattttgatttgatcctagaaaaattaaaaaaaattcacaatgacccattcactattta 22
Query: 352 atacatttgcttatattcagt 372
|||||||||||||||||||||
Sbjct: 21 atacatttgcttatattcagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1060
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1050
Effective search space: 680400
Effective search space used: 680400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
