Query= MSMg01no519_m04.b1 MSMg01no519_m04.b1 CHROMAT_FILE:
MSMg01no519_m04.b1 PHD_FILE: MSMg01no519_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:34 2005
(680 letters)
>mm_chr18_83907216_83908294
Length = 1079
Score = 1257 bits (650), Expect = 0.0
Identities = 671/678 (98%), Gaps = 3/678 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagcaagtgca-aatttatgctgaattataagagaaatctcctaacggcgagat 62
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 ggaattcagcaag-ggacaatttatgctgaattataagagaaatctcctaacggcgagat 821
Query: 63 ctattagactagagaataggctcccaagggaagcgagtgccattgccagagtcatttaga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 ctattagactagagaataggctcccaagggaagcgagtgccattgccagagtcatttaga 761
Query: 123 ggctggctcgggtccataagtaaaaataaatttggttgtctcattttattctccatttct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 ggctggctcgggtccataagtaaaaataaatttggttgtctcattttattctccatttct 701
Query: 183 gtggaccctgcatcagcactggtaagttagggagaaagacgtggagtaattgacctgaag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gtggaccctgcatcagcactggtaagttagggagaaagacgtggagtaattgacctgaag 641
Query: 243 gggatgctagacttagacacagcaggccttctggctgtgacttagacttcagaggcaagc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gggatgctagacttagacacagcaggccttctggctgtgacttagacttcagaggcaagc 581
Query: 303 actgtgctgtcacatcgtttacaaagtactaccttgggctgattttatttgttcctgcag 362
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 actgtgctgtcgcatcgtttacaaagtactaccttgggctgattttatttgttcctgcag 521
Query: 363 gtgtttcccaagcctcagaagaaggcagactgtatctcttcctgtggtatctgatggctc 422
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 520 gtgtttcccaagcctcagaa-aaggcaggctgtatctcttcctgtggtatctgatggctc 462
Query: 423 tcgggatggaccaccctgagttttcactgtgcttctgaaagagaacttggctcctgtctg 482
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 461 tcgggatggaccaccctgagttttcactgtacttctgaaagagaacttggctcctgtctg 402
Query: 483 caatattccacccaaactagagccattcccagagacacagtgagagcctcccattggtct 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 caatattccacccaaactagagccattcccagagacacagtgagagcctcccattggtct 342
Query: 543 tccaaagctttggaggcttttatcactatctttttgaatttggcacagcctgaaagtgta 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tccaaagctttggaggcttttatcactatctttttgaatttggcacagcctgaaagtgta 282
Query: 603 gaaatttgatccagacaataatgcggttaattattctccaacttataatttttaatgaag 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gaaatttgatccagacaataatgcggttaattattctccaacttataatttttaatgaag 222
Query: 663 tgacaaaggccatctttt 680
||||||||||||||||||
Sbjct: 221 tgacaaaggccatctttt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1079
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1069
Effective search space: 716230
Effective search space used: 716230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_m04.g1 MSMg01no519_m04.g1 CHROMAT_FILE:
MSMg01no519_m04.g1 PHD_FILE: MSMg01no519_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:34 2005
(654 letters)
>mm_chr18_83755445_83756491
Length = 1047
Score = 1187 bits (614), Expect = 0.0
Identities = 642/654 (98%), Gaps = 7/654 (1%)
Strand = Plus / Plus
Query: 1 actgtagacagtggtatggaatgcctcgaatgatgaccctggaaatttggcaggtcacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgtagacagtggtatggaatgcctcgaatgatgaccctggaaatttggcaggtcacat 260
Query: 61 tcagtctgtgcccagagttaagctcaaggaacacttcacggacattcactgttgtatcac 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagtctgtgcccagagttaacctcaaggaacacttcacggacattcactgttgtatcac 320
Query: 121 ttgctgtgggcagcatcacagttggaacgacctacttcctgtctgtggcatccaatgtcc 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 ttgctgtgggcagcatcacagttggaacaacctacttcctgtctgtggcatccaatgtcc 380
Query: 181 atgacttgggttgtatgtatatcgaccagagaatgagtgggaactatggtgtcactcaaa 240
||||||||||||| |||||| |||||||| |||||||||||||| | |||||||||||
Sbjct: 381 atgacttgggttg--tgtata--gaccagaggatgagtgggaactacgatgtcactcaaa 436
Query: 241 tggcaccattgtaaaagacctagtggttccaaaagaaactcactgggctctatgttctgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tggcaccattgtaaaagacctagtggttccaaaagaaactcactgggctctatgttctgg 496
Query: 301 agatgaagagaatttttaaaaagcacataggtactaggtaaacaccaaaactttgtcata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agatgaagagaatttttaaaaagcacataggtactaggtaaacaccaaaactttgtcata 556
Query: 361 aaacctactaattgagggtgtcacttttaatcacaaaagtatgtaacaaactgaccagtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaacctactaattgagggtgtcacttttaatcacaaaagtatgtaacaaactgaccagtg 616
Query: 421 gtctacgatgcttagcttttggcaacatccagcctcattctatgcttatgaaaagggcta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gtctacgatgcttagcttttggcaacatccagcctcattctatgcttatgaaaagggcta 676
Query: 481 agacacctcagtgttgatattgctatgcagatactgcagcaacaccaaaaatggtacctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 agacacctcagtgttgatattgctatgcagatactgcagcaacaccaaaaatggtacctt 736
Query: 541 aaccagtgttgtggagacagagcagatattgtgaatactgtcaaactttacagtacctat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aaccagtgttgtggagacagagcagatattgtgaatactgtcaaactttacagtacctat 796
Query: 601 aataattaaagatttaaaataatctcactttgctagatggaaggagaccatgca 654
|||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 797 aataattaaagatttaaaataatctc---ttgctagatggaaggagaccatgca 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1047
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1037
Effective search space: 667828
Effective search space used: 667828
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
