BAC Information

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BAC

Clone NameMSMg01-519M16
Chromosome18 (Build37)
Map Location 42,548,305 - 42,729,918
singlet/doubletdoublet
Overlap genePou4f3, LOC100042767, LOC100042027, Tcerg1
Upstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27
Downstream geneGpr151, LOC100042037, Ppp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519M16.T7 (MSMg01no519_m16.b1)MSMg01-519M16.TJ (MSMg01no519_m16.g1)
ACCAG590978AG590979
length754761
length of high quality
(start - end)		614 (37 - 650)619 (69 - 687)
definitionCHROMAT_FILE: MSMg01no519_m16.b1 PHD_FILE: MSMg01no519_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:37 2005CHROMAT_FILE: MSMg01no519_m16.g1 PHD_FILE: MSMg01no519_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,729,603 - 42,729,918)(42,548,305 - 42,548,919)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGCG
CATTAAAGACCAGCCATGATGAGTTATAGTTCCAAAAGTGAGAAGTTGAA
CATTTTCTTCTATGACATGAGGTATTATGATATCCACCCTCAGCTCTCCT
GCGCATCTAAACGGGGGGCGGGGAAGTTTAAAATGTCTCTAGGTGCTGAT
AGCTTGATCTTATATATAAGATCATGAAGACTCCACTGAAACACTGTTAG
AAACAAGCACTTTAGTAAAGGGTATAAAATCGCCATACAAATATTAGTAA
AATTTCACAAGCAATCAACATGTAAAGTATGAGAACAATCTCACAAGCTC
GGAACAGTATCAACACCCCCCCTTCAAAAGATAGTCAATATAAATATAAA
ATTAAGGAGTGAATTACTTGCATGCTAAAAACTATTAAACATTGATAAAA
ACTGAACAAAGTACAATGTGACTGATATTCTGTGCCTGCTGATTAGACAA
AGTTCTTATATGCCTATGGCGTCACAAGATCCTAAGCACCAAGGCAATCT
TGAGCACAAGAAACAAAGATGGAAACATCACATTCTCTAATTTCAAGATA
ATAATACTAACTTTGAAAAAAAATACAGAGCACATCACGGATCTGGCTGG
TTCACCAACACCACTAATAGCAACTAAAAGTTGTCACACTACAGACAATG
ATAGGAAATGGGAGAGAATAAAAAGACAGAGAGGAAAGAAGAAGTTACTA
ATAN

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCACAGTTATAAAAGTCCCAACATGATTGAAA
AGTCCAAGTTCAATAAAATCTCTGGGTCTCCAAGAAAATCCTTAAATGTG
AGTTCTGGTAACAATCCAGAAATATTCTACATCCAATATACAATGGTACC
AGGTGAACATCACATTCCAAAAGACAGGAAGGAGAGCATAGAACAAATGG
ATGGGACCAAGTCAAGACTAAAACCCAGGAGAGAAAATATGAAACTCTGC
AGCTCCATTTGTAGCACTGAGGGCACGTCATATAATGACGTGCGGTTGAA
GATGGTTGTTAGCTGCTGTGTGGGTCCTGGGTTCTCTGGATGAACATTGA
CTAGTAAAAAAATTTTTTTGAATGAATTAATTTACTTATCTTCTGGGTGA
GGCAGGATCTGAATGTGGAGGCCAGAGGGCAACTGTGGGAGTCACTTGTC
TCCTATGTGTTAGATCTGGGGAGCCAATTGAGGAATCTAGGTCCCCAAGC
TTCATGGCAGGCGCCTTTACTAGCGGAGTCATCTCACTGACCTTGGCACT
CATCACTTTAATAACAGTTACCTTTTAATTCATTCATTTAATTTAATTAA
TGATAATTCCACAGCATTCAACTCAATCCTTTTTCTGGCCATATGGTTTT
CAAAATCTTTTGCTGTCTTGAGTCTCATTATAAAACCAACTAAAACAATG
ACCACACACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_m16.b1 MSMg01no519_m16.b1 CHROMAT_FILE:
MSMg01no519_m16.b1 PHD_FILE: MSMg01no519_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:37 2005
         (614 letters)



>mm_chr18_42729603_42730616
          Length = 1014

 Score =  572 bits (296), Expect = e-167
 Identities = 311/316 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagcgcattaaagaccagccatgatgagttatagttccaaaagtgagaagttga 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggaattcagcgcagtaaagaccagccatgatgagttatagttccaaaagtgagaagttga 257

                                                                       
Query: 64  acattttcttctatgacatgaggtattatgatatccaccctcagctctcctgcgcatcta 123
           ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 256 acattttcttctatgacatgaggtattatgatagccaccctcagatctcctgcgcatcta 197

                                                                       
Query: 124 aacggggggcggggaagtttaaaatgtctctaggtgctgatagcttgatcttatatataa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 aacggggggcggggaagtttaaaatgtctctaggtgctgatagcttgatcttatatataa 137

                                                                       
Query: 184 gatcatgaagactccactgaaacactgttagaaacaagcactttagtaaagggtataaaa 243
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gatcacgaagactccactgaaacactgttagaaacaagcactttagtaaagggtataaaa 77

                                                                       
Query: 244 tcgccatacaaatattagtaaaatttcacaagcaatcaacatgtaaagtatgagaacaat 303
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  ccgccatacaaatattagtaaaatttcacaagcaatcaacatgtaaagtatgagaacaat 17

                           
Query: 304 ctcacaagctcggaac 319
           ||||||||||||||||
Sbjct: 16  ctcacaagctcggaac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no519_m16.g1 MSMg01no519_m16.g1 CHROMAT_FILE:
MSMg01no519_m16.g1 PHD_FILE: MSMg01no519_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:37 2005
         (619 letters)



>mm_chr18_42548101_42549119
          Length = 1019

 Score = 1120 bits (579), Expect = 0.0
 Identities = 606/615 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   agttataaaagtcccaacatgattgaaaagtccaagttcaataaaatctctgggtctcca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 agttataaaagtcccaacatgattgaaaagtccaagttcaataaaatctctgggtctcca 264

                                                                       
Query: 65  agaaaatccttaaatgtgagttctggtaacaatccagaaatattctacatccaatataca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaaaatccttaaatgtgagttctggtaacaatccagaaatattctacatccaatataca 324

                                                                       
Query: 125 atggtaccaggtgaacatcacattccaaaagacaggaaggagagcatagaacaaatggat 184
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 atggtaccaggtgaacatcacattccaaaagacgggaaggagagcatagaacaaatggat 384

                                                                       
Query: 185 gggaccaagtcaagactaaaacccaggagagaaaatatgaaactctgcagctccatttgt 244
           ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 385 gggaccaagtcaagactaaaacccaggagaggaaatacgaaactctgcagctccatttgt 444

                                                                       
Query: 245 agcactgagggcacgtcatataatgacgtgcggttgaagatggttgttagctgctgtgtg 304
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agcaccgagggcacgtcatataatgacgtgcggttgaagatggttgttagctgctgtgtg 504

                                                                       
Query: 305 ggtcctgggttctctggatgaacattgactagtaaaaaaatttttttgaatgaattaatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggtcctgggttctctggatgaacattgactagtaaaaaaatttttttgaatgaattaatt 564

                                                                       
Query: 365 tacttatcttctgggtgaggcaggatctgaatgtggaggccagagggcaactgtgggagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tacttatcttctgggtgaggcaggatctgaatgtggaggccagagggcaactgtgggagt 624

                                                                       
Query: 425 cacttgtctcctatgtgttagatctggggagccaattgaggaatctaggtccccaagctt 484
           ||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||
Sbjct: 625 cacttgtctcctatgtgttagatctggggagacaactgaggaatccaggtccccaagctt 684

                                                                       
Query: 485 catggcaggcgcctttactagcggagtcatctcactgaccttggcactcatcactttaat 544
           |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 catgccaggcacctttactagcggagtcatctcactgaccttggcactcatcactttaat 744

                                                                       
Query: 545 aacagttaccttttaattcattcatttaatttaattaatgataattccacagcattcaac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aacagttaccttttaattcattcatttaatttaattaatgataattccacagcattcaac 804

                          
Query: 605 tcaatcctttttctg 619
           |||||||||||||||
Sbjct: 805 tcaatcctttttctg 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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