BAC Information

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BAC

Clone NameMSMg01-519P15
Chromosome18 (Build37)
Map Location 23,245,515 - 23,245,893
singlet/doubletsinglet
Overlap geneLOC100040579
Upstream gene4921528I01Rik, LOC546708, LOC100040547, Asxl3, Nol4
Downstream geneLOC665797, Dtna, Mapre2, EG665813, LOC100040623, Zfp397, C230097I24Rik, Zfp35, Zfp191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519P15.T7 (MSMg01no519_p15.b1)MSMg01-519P15.TJ (MSMg01no519_p15.g1)
ACCAG591120AG591121
length758760
length of high quality
(start - end)		418 (33 - 450)377 (66 - 442)
definitionCHROMAT_FILE: MSMg01no519_p15.b1 PHD_FILE: MSMg01no519_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:52 2005CHROMAT_FILE: MSMg01no519_p15.g1 PHD_FILE: MSMg01no519_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAAACCT
GATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGT
CAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGG
GAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGT
GACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCTC
TGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGC
TCATGGATTGGCAGGATCAATATTGTAAAAATGGCTATCTTGCCAAAAGC
AATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCA
ATGAATTAGAAGGAGCAATTTGCAAATTTATCTGGAATAACAAAAAACCT
AGGATAGCAAAAACTCTTCTCAAGGAAATAAAGAAACTCCTGGTGGAATA
CACCCAGGCCGGAAACTAAAAAGTTTTTTTAACAAAAAGAAATTTTGGGG
GGGAAAAAAACGCGTGGGGGGTCGGGGGTGTNNAAATAAAAACAACAAAA
AATTCCCTCCCCGGGGGGGGGGCGATTTTTTTTTATTCCCCCCATTAAGG
TGAAACCCCCCCCTCCCCCTCCGGGGGGTGGGTGTTTTTTTTTTTTTCAG
GTGGGGGGGGGGGGGAAACCCCCCCCCCCTTCCCGCGGTGAAGAGAAAAA
GAAAATTG

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGGACAGCCATGGCTATACAGAGAAACCCTGTCT
CGAAAAAAACAAACAAACAAACAAAAAACAAAACAAAACAAAAAAACCCC
AAAAAACAAAAAAACCAAAACCAAAACCAAAAAGAGTCATTTATAATTCA
TCAATAAGTATACATAAATACCACAAATGGAAGTTATTCNTGAATGGAGG
AAAAAAGAGGAACAAAACATTTGAGAGAAAGAAATTGTTGGTCAGGGGGA
TAGGGTGTGACAGGGCATTGCCATGGAATTTGAGGAAGACAGACAGCTGC
TACATGAGGTCCTGAGATGAGAGAAAGAGAGAACTGTTAGGAAAATGAAG
ATGTAGGCTGTGAAGCAATGCTGGTTTAAGCAACTACAGAAACAGNTCTC
TCCTGGTTAATTCAATTCCTCCTGGACCAAAAAAGGTCTGGCCCGGGGGG
TTTTCCCCAGAGGGCCCCCCCTTTTTTTTCCCCCCTAATGGGGGGGGGGG
GAAAAAAATTTTTTTTAAACCCTCACAGAAAATTTGTTTGGTGTTCTTGG
AANGAGGGGGGGTGCCCCCCCCCCACAAAAAGGGGGGGGGGAAAAAAAAA
AAAATAAATCTTTTTTTTTTTGGTGTGGGGCGCCCCCCCCCCCCCCCCCC
TTATAANNAAAAAATAAAAATATCTCCGGTCGTGTGGTTGTCGATATTCT
CTTCCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_p15.g1 MSMg01no519_p15.g1 CHROMAT_FILE:
MSMg01no519_p15.g1 PHD_FILE: MSMg01no519_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:52 2005
         (377 letters)



>mm_chr18_23245199_23245970
          Length = 772

 Score =  659 bits (341), Expect = 0.0
 Identities = 370/385 (96%), Gaps = 14/385 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccatggctatacagagaaaccctgtctcgaaaaaaacaaacaaacaaacaa- 59
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 695 caggacagccatggctatacagagaaaccctgtctcgaaaaaaacaaacaaacaaacaaa 636

                                                                       
Query: 60  ------aaaacaaaacaaaac-aaaaaaaccccaaaaaacaaaaaaaccaaaaccaaaac 112
                 ||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 635 caaaacaaaacaaaacaaaacaaaaaaaaccccaaaaaac-aaaaaaccaaaaccaaaac 577

                                                                       
Query: 113 caaaaagagtcatttataattcatcaataagtatacataaataccacaaatggaagttat 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 caaaaagagtcatttataattcatcaataagtatacataaataccacaaatggaagttat 517

                                                                       
Query: 173 tcntgaatggaggaaaaaagaggaacaaaacatttgagagaaagaaattgttggtcaggg 232
           || |||||   ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 516 tc-tgaat---ggaaaaaagaggaacaaaacatttgagagaaag-aattgttggtcaggg 462

                                                                       
Query: 233 ggatagggtgtgacagggcattgccatggaatttgaggaagacagacagctgctacatga 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ggatagggtgtgacagggcattgccatggaatttgaggaagacagacagctgctacatga 402

                                                                       
Query: 293 ggtcctgagatgagagaaagagagaactgttaggaaaatgaagatgtaggctgtgaagca 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ggtcctgagatgagagaaagagagaactgttaggaaaatgaagatgtaggctgtgaagca 342

                                    
Query: 353 atgctggtttaagcaactacagaaa 377
           ||||||||| |||||||||||||||
Sbjct: 341 atgctggttaaagcaactacagaaa 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 772
Length adjustment: 9
Effective length of query: 368
Effective length of database: 763
Effective search space:   280784
Effective search space used:   280784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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