Query= MSMg01no520_c15.b1 MSMg01no520_c15.b1 CHROMAT_FILE:
MSMg01no520_c15.b1 PHD_FILE: MSMg01no520_c15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:07 2005
(694 letters)
>mm_chr18_16019130_16020223
Length = 1094
Score = 1276 bits (660), Expect = 0.0
Identities = 683/691 (98%), Gaps = 1/691 (0%)
Strand = Plus / Minus
Query: 5 gaattcactctataagaaaagagtctatgccctgtttgagcaaacacacacacacagaga 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 731 gaattcactctataagaaaagagtctatgccctgtttgagcaaacacacacacacacaga 672
Query: 65 gacacacacacaccaccaccaccactacctaaatccatatctactcagtgctctggattc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gacacacacacaccaccaccaccactacctaaatccatatctactcagtgctctggattc 612
Query: 125 tagaactagtgtctttgttataaccaggtcatcaggttgtagtggaatagattgagcctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tagaactagtgtctttgttataaccaggtcatcaggttgtagtggaatagattgagcctt 552
Query: 185 ctatctagtgaccataagaggctgatatgggaagatgcagaggatccctcgtgaaaacac 244
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 551 ctatctagtgaccgtaagaggctgatatgggaagatgcagaggatccctcatgaaaacac 492
Query: 245 aggaaagcaaccagatgacaatggagatagagaacagagtggtgcactgacaaattactg 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 491 aggaaagcaaccagatgacaatggagatagagaacagagtggtgcactgacaaactactg 432
Query: 305 cctgacaacagtagttagcagacactaagggtgaagagaagaccatatagtgtcctccgc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cctgacaacagtagttagcagacactaagggtgaagagaagaccatatagtgtcctccgc 372
Query: 365 agggtgagcagagtgcaggtttctgatggtatttgattttatatattcatggcctctaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agggtgagcagagtgcaggtttctgatggtatttgattttatatattcatggcctctaga 312
Query: 425 actctaaaaggagaaattgctgtagtgtctaattacactgtttgtgcccttcactagata 484
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 311 actctaaaaggagaaattgctgtagtgtctaattatactgtttgtgcccttcactagata 252
Query: 485 atcccaagaaataaaattgaggattggaagatttttttaaatttctgtgcatatatatat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atcccaagaaataaaattgaggattggaagatttttttaaatttctgtgcatatatatat 192
Query: 545 -gtgctaatgtggatatgtgtatgtgtgtatgagagcaggtgccaacagaggacatcata 603
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 191 agtgctaatgtggatatgtgtatgtgtgcatgagagcaggtgccaacagaggacatcata 132
Query: 604 tctcanggaactggagttatgggcattgagaggaaactgaattcctgttctgagaaagaa 663
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tctcagggaactggagttatgggcattgagaggaaactgaattcctgttctgagaaagaa 72
Query: 664 cagcacacactatttactcctgagccatatc 694
|||||||||||||||||||||||||||||||
Sbjct: 71 cagcacacactatttactcctgagccatatc 41
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_c15.g1 MSMg01no520_c15.g1 CHROMAT_FILE:
MSMg01no520_c15.g1 PHD_FILE: MSMg01no520_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:07 2005
(492 letters)
>mm_chr18_15918801_15919692
Length = 892
Score = 886 bits (458), Expect = 0.0
Identities = 486/500 (97%), Gaps = 8/500 (1%)
Strand = Plus / Plus
Query: 1 atcctctggcttgagcagaggttgtgtttgcttgctccttttcctccgttcatggttgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 atcctctggcttgagcagaggttgtgtttgcttgctccttttcctccgttcatggttgat 252
Query: 61 gagccctgtggccaagtgcttctaagtaccggatgagctatgaaggactacagcagggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gagccctgtggccaagtgcttctaagtaccggatgagctatgaaggactacagcagggag 312
Query: 121 tttgtatgaagttgtcactgggaataactgagacccagtagttctccggccatgcctgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tttgtatgaagttgtcactgggaataactgagacccagtagttctccggccatgcctgtc 372
Query: 181 aaattcggacaagcaggagctagcagcttgtgaaggaattttggaggaacaagactaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaattcggacaagcaggagctagcagcttgtgaaggaattttggaggaacaagactaagg 432
Query: 241 taatttaaaaacaaatcattaaaattaaagcatactgaggtttaaaaattagctccaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 taatttaaaaacaaatcattaaaattaaagcatactgaggtttaaaaattagctccaaat 492
Query: 301 attatggtagcaattattttgaccaaactcgggcaaaaaaaaaaaaaaa--------tca 352
|||||| |||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 493 attatgatagcaattatcttgaccaaactcgggcaaaaaaaaaaaaaaaaaaaaaaatca 552
Query: 353 agtgaacccatgtttgcttagtttgcagacaaacagcttctataaatcatcatcaacaac 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 agtgaacccatgtttgcttagtttgcagacaaacagcttctataaatcatcatcaacaac 612
Query: 413 aacaaaaaaccaatcaaaaaaaaaaaaaaaaccagcaaactttcttttaaagcagtaaag 472
||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 613 aacaaaaaaccaaacaatcaaaaaaaaaaaaccagcaaactttcttttaaagcattaaag 672
Query: 473 agtgaaactgtcctgaatcg 492
||||||||||||||||||||
Sbjct: 673 agtgaaactgtcctgaatcg 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
