Query= MSMg01no520_p15.b1 MSMg01no520_p15.b1 CHROMAT_FILE:
MSMg01no520_p15.b1 PHD_FILE: MSMg01no520_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:10 2005
(703 letters)
>mm_chr18_50709548_50710650
Length = 1103
Score = 1313 bits (679), Expect = 0.0
Identities = 694/699 (99%)
Strand = Plus / Plus
Query: 5 gaattctcaaaaagatatttctgttaaaggatttttttgtttgattttttgttttggttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaaaaagatatttctgttaaaggatttttttgtttgattttttgttttggttt 264
Query: 65 tttgtttttgtttttcgagacagggtttctctgtatagccctggctgtcctgaactcact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgtttttgtttttcgagacagggtttctctgtatagccctggctgtcctgaactcact 324
Query: 125 ttgtagaccaggctggtctcgaactcagaaatctgcctgcctctgcctcccaagtgctgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgtagaccaggctggtctcgaactcagaaatctgcctgcctctgcctcccaagtgctgg 384
Query: 185 gattaaaggtatacaccaccaccgcccagctctgtaaaaggtttttacaagatctaacta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gattaaaggtatacaccaccaccgcccagctctgtaaaaggtttttacaagatctaacta 444
Query: 245 tactgaattttacttgtggacctggctatgcaaaggctaaagtttacccatgcagtcagt 304
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 tactgaattttacttgtggacctggctatgtaaaggctaaagtttacccatgcagtcagt 504
Query: 305 tctcaagcatggtgcccaggtcatcagcagaagcactaacggagtatttgctggaaattc 364
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 505 tctcaagcatggtgcccaggtcatcagcagaagcactaatggagtatttgctggaaattc 564
Query: 365 acatatttaatcccatgctataccattcagtcaaaactttcaagattcaggcctagaatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acatatttaatcccatgctataccattcagtcaaaactttcaagattcaggcctagaatt 624
Query: 425 ctgggtcttacaggcctttcagtcaggcaactcttgtgtttgaagtgtgatataatagag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgggtcttacaggcctttcagtcaggcaactcttgtgtttgaagtgtgatataatagag 684
Query: 485 tctgagctacagagagttctagtaacccatatatctacacaggcatacacagacacacac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tctgagctacagagagttctagtaacccatatatctacacaggcatacacagacacacac 744
Query: 545 gtcttgaagaatcaatttactaatgaattgtctatatattctatataatgagttgtgcac 604
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtcttgaaaaatcaatttactaatgaattgtctatatattctatataatgagttgtgcac 804
Query: 605 atttagaaaataccccagggctctccaagccagctctgactctgtatgatatctcagaag 664
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 805 attcagaaaataccccagggttctccaagccagctctgactctgtatgatatctcagaag 864
Query: 665 ccaactgaaaacattgtctggaagcctggcttatttagt 703
|||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ccaactgaaaacattgtctggaagcctggcttatttagt 903
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space: 757449
Effective search space used: 757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no520_p15.g1 MSMg01no520_p15.g1 CHROMAT_FILE:
MSMg01no520_p15.g1 PHD_FILE: MSMg01no520_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:10 2005
(669 letters)
>mm_chr18_50905544_50906612
Length = 1069
Score = 1251 bits (647), Expect = 0.0
Identities = 659/665 (99%), Gaps = 4/665 (0%)
Strand = Plus / Minus
Query: 5 ctatgatgaactcataacatcactgggagctaaaataagatctttctactagacactgct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1069 ctatgatgaactcataacatcactgggagctaaaataagatctttctactagacacttct 1010
Query: 65 ttttgtcagagtgttttacctcagcaacaggaaatgaaatgaggacatatgccatagtca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 ttttgtcagagtgttttacctcagcaacaggaaatgaaatgaggacatatgccatagtca 950
Query: 125 cttagcctctgactgctggttccttcttcccaaaataatttcatcaatgataaatggtaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 cttagcctctgactgctggttccttcttcccaaaataatttcatcaatgataaatggt-- 892
Query: 185 aaaaaaaaaaaaaaaaaaaaaaaagacaaatttcgatgttgaaatgtcacataaagcaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 --aaaaaaaaaaaaaaaaaaaaaagacaaatttcgatgttgaaatgtcacataaagcaat 834
Query: 245 ttaggacttgaaattcccaaacccaatggaggcttgactcttattggattattgatattc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 ttaggacttgaaattcccaaacccaatggaggcttgactcttattggattattgatattc 774
Query: 305 atggaatgcactttaatctcctgcattaggaactcctttttgacatggccatattgatgc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 atggaatgcactttaatctcctgcattaggaactcctttttgacatggccatattgatgc 714
Query: 365 aaaatgggtacttcttgaaatagaaataatgtcaagagctcgaaataccatggggataat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 aaaatgggtacttcttgaaatagaaataatgtcaagagctcgaaataccatggggataat 654
Query: 425 taatctgaatcataaagaggatagaaggaggaaatttgtatcatttgtaagtatgtactt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 taatctgaatcataaagaggatagaaggaggaaatttgtatcatttgtaagtatgtactt 594
Query: 485 cacttaaagttaaattgaatacacatgaggaaaattccagagagaatgccaagcaaagtc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 cacttaaagttaaattgaatacacatgaggaaaattccagagagaatgccaagcaaagtc 534
Query: 545 aatcagcgcccataagaaacactgactctacatctatgcttcggtatgtcaaaacaatct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aatcagcgcccataagaaacactgactctacatctatgcttcggtatgtcaaaacaatct 474
Query: 605 tgcttatagttctctaggtaatgctgtagtgtagcatgcagttattttcaagctttaagt 664
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 473 tgcttatagttctctaggtaatgctgtagtgtagcgtgcagttattttcaagctttaagt 414
Query: 665 ttttt 669
|||||
Sbjct: 413 ttttt 409
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
