Query= MSMg01no521_a19.b1 MSMg01no521_a19.b1 CHROMAT_FILE:
MSMg01no521_a19.b1 PHD_FILE: MSMg01no521_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:16 2005
(598 letters)
>mm_chr18_68187652_68188649
Length = 998
Score = 1064 bits (550), Expect = 0.0
Identities = 581/594 (97%), Gaps = 6/594 (1%)
Strand = Plus / Minus
Query: 5 gaattctttagactatgagtatagttatgtttctctgactatgcacttcagatgacataa 64
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaattctttagact-----t-tagttatgtttctctgactatgcacttcagatgacataa 628
Query: 65 accaaaacaagccgagccaagccgaactgaagagcaaacccatctggaagccgttatccc 124
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 627 accaaaacaagccgagccaagccaaactgaagagcaaacccatctggaagccgttatccc 568
Query: 125 agaaggaaagagcaaaggacactcagaaaccttagactaggagatgaggaatgaaggtca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agaaggaaagagcaaaggacactcagaaaccttagactaggagatgaggaatgaaggtca 508
Query: 185 aggcggaaggaagaagagtccagcagaagcaaaaggagccagccagctgagggtggctca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aggcggaaggaagaagagtccagcagaagcaaaaggagccagccagctgagggtggctca 448
Query: 245 ccacacctcctctggtgtgtggtgagcctgctgctctgaagtttccacacatcccatgag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ccacacctcctctggtgtgtggtgagcctgctgctctgaagtttccacacatcccatgag 388
Query: 305 agcatggctgccctcttggaccacattttactacagagtcaggatgcaggctgcacggtg 364
|||||||||||||| ||||||||||||||||||||||||||||||| |||| ||| ||||
Sbjct: 387 agcatggctgcccttttggaccacattttactacagagtcaggatgtaggcggcatggtg 328
Query: 365 gtctcacttttgtgtatcatcacagtgaatacaatcctccttgttcatttttatctggct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtctcacttttgtgtatcatcacagtgaatacaatcctccttgttcatttttatctggct 268
Query: 425 gcacgctgaagtcatactactaatatctctacttttgcttcttggcctaggttgctctcc 484
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 267 gcatgctgaagtcatactactaatatctctacttttgcttcttggcctaggttgctcttc 208
Query: 485 attgctatgataaaacaccatatctaaaacaacttggaaagaaagggtttgtttggcttg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attgctatgataaaacaccatatctaaaacaacttggaaagaaagggtttgtttggcttg 148
Query: 545 cccatccacctaacagtccatcactgagggaaatcaggacaggcgcctggagaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 cccatccacctaacagtccatcactgagggaaatcaggacaggcgcctggagaa 94
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_a19.g1 MSMg01no521_a19.g1 CHROMAT_FILE:
MSMg01no521_a19.g1 PHD_FILE: MSMg01no521_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:16 2005
(629 letters)
>mm_chr18_68028866_68029894
Length = 1029
Score = 1187 bits (614), Expect = 0.0
Identities = 623/626 (99%), Gaps = 1/626 (0%)
Strand = Plus / Plus
Query: 1 ttgcccctgcacccgagccttccattagtcgtttgacaaaactaataacaaaaccacctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcccctgcacccgagccttccattagtcgtttgacaaaactaataacaaaaccacctt 260
Query: 61 ccacaaaagttgaaattagaagcaagacagtgatttttcctccaacagaacctggtagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacaaaagttgaaattagaagcaagacagtgatttttcctccaacagaacctggtagaa 320
Query: 121 cctcaggtgggtcagatggcagttgtgtcagatggcagtcgctgcatgcagtctggtgtt 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcaggtgggtcagatggcagtcgtgtcagatggcagtcgctgcatgcagtctggtgtt 380
Query: 181 ttgtttttagttttttggtttttttttttttttcttttgttttgttttaagtattcaact 240
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 ttgtttttagttttttgggttttttttttttt-cttttgttttgttttaagtattcaact 439
Query: 241 gttttcatatgctggagatcaaagccagggcatcacacatggtagtgctttcctgctgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttttcatatgctggagatcaaagccagggcatcacacatggtagtgctttcctgctgaa 499
Query: 301 ctatactttttgccccttatgctgaaaggccaccttgagttaataagtacgaattttact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctatactttttgccccttatgctgaaaggccaccttgagttaataagtacgaattttact 559
Query: 361 cctacttaagaagagcatcatggggccattggcagtcatttcaataatggggtggatttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cctacttaagaagagcatcatggggccattggcagtcatttcaataatggggtggatttg 619
Query: 421 aaaacacagtcttaaatcgaagctcgggctctaataactgtgcatttaggtttcattaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaaacacagtcttaaatcgaagctcgggctctaataactgtgcatttaggtttcattaga 679
Query: 481 tggtcattactatcctgttccaaccagatctctgacctagtagttgaggaagtgagatgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tggtcattactatcctgttccaaccagatctctgacctagtagttgaggaagtgagatgg 739
Query: 541 gtgtcttagttagggttgtattgctgtgaagagacaccataaccacagcaactcttacaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtgtcttagttagggttgtattgctgtgaagagacaccataaccacagcaactcttacaa 799
Query: 601 aggaaatgtggttctgggttctgcct 626
||||||||||||||||||||||||||
Sbjct: 800 aggaaatgtggttctgggttctgcct 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
