Query= MSMg01no521_m06.b1 MSMg01no521_m06.b1 CHROMAT_FILE:
MSMg01no521_m06.b1 PHD_FILE: MSMg01no521_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:12 2005
(524 letters)
>mm_chr18_20362962_20363885
Length = 924
Score = 990 bits (512), Expect = 0.0
Identities = 518/520 (99%)
Strand = Plus / Plus
Query: 5 gaattctgggagctaagaaaacaggaaacataacctaactccccctccctccctctcttc 64
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgggagctaagaaaacaggagacataacctaactccccctccctccctctcttc 264
Query: 65 ctcacctccctctctcccttctttcctccctacttctctcccatattcctcaattcctct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcacctccctctctcccttctttcctccctacttctctcccatattcctcaattcctct 324
Query: 125 cattgattatattactccagaatccagagagcagggaagtataaatgtagttgttatgat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cattgattatattactccagaatccagagagcagggaagtataaatgtagttgttatgat 384
Query: 185 gagaggtcaagaaaagagcaagtaatacagatctaacagaatgcaagtgacttaacatct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagaggtcaagaaaagagcaagtaatacagatctaacagaatgcaagtgacttaacatct 444
Query: 245 ttgaatctatcttggttgtaaaatgagcaccattatgcagtgcttttatagtgaacgtta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgaatctatcttggttgtaaaatgagcaccattatgcagtgcttttatagtgaacgtta 504
Query: 305 aatgaatgtatgttaaagtgtatatttacacacaagaagagatggatacctgacactcag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatgaatgtatgttaaagtgtatatttacacacaagaagagatggatacctgacactcag 564
Query: 365 ttatatattttaagaatagcttttaaattcccaaactatttcttaaaggtttgattttta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttatatattttaagaatagcttttaaattcccaaactatttcttaaaggtttgattttta 624
Query: 425 ctgtgtttaggtttttgttgaagctttttaaaattatggcttggtgttactaaataacct 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 625 ctgtgtttaggtttttgttgaagctttttaaaattatggcttggtgttactaaatagcct 684
Query: 485 ctgtcttttatccttatatcaaaatttctcttaaattaaa 524
||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgtcttttatccttatatcaaaatttctcttaaattaaa 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space: 469796
Effective search space used: 469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_m06.g1 MSMg01no521_m06.g1 CHROMAT_FILE:
MSMg01no521_m06.g1 PHD_FILE: MSMg01no521_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:12 2005
(492 letters)
>mm_chr18_20563368_20564260
Length = 893
Score = 907 bits (469), Expect = 0.0
Identities = 487/493 (98%), Gaps = 1/493 (0%)
Strand = Plus / Minus
Query: 1 actcagctgttaaaggatatgtaggctcacaaacaaaaataaaatatacagcctatcaga 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 actcagctgttaaaggatacgtaggctcacaaacaaaaataaaatatacagcctatcaga 634
Query: 61 tcagtttcagtaggctgtcctttatcattcatctcatttacatatatgttattgaagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tcagtttcagtaggctgtcctttatcattcatctcatttacatatatgttattgaagaag 574
Query: 121 gaattataaaaacacatttaaaaacaaccccctcccatcccactacccaccccttcccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gaattataaaaacacatttaaaaacaaccccctcccatcccactacccaccccttcccaa 514
Query: 181 acaaaaatgctaaacaataagatacccaaccagagaggacagagccca-tttagtctttg 239
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 513 acaaaaatgctaaacaataagatacccaaccagagaggacagagcccattttagtctttg 454
Query: 240 gttgctggaaagttgtctttttcttacctgagttgtcaacatattctataacattggcat 299
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 453 gttgctggaaagttgtctttttcttacctgagttgtcaatatattctataacattggcat 394
Query: 300 taccaggtggcatttgtggcacacagatggtggttatcccctgaaagacaaaagacaaca 359
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 393 taccaggtggcatttgtggcacacagatggtggttatcccctaaaagacaaaagacaaca 334
Query: 360 ttttcccatttgtaatgagctttttcttcctctacttgtatatttttattctaaaattac 419
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttttcccatttgtaatgagccttttcttcctctacttgtatatttttattctaaaattac 274
Query: 420 cacagagttcctaaaagaagactatttaggatcattttaaattcaacttaaaagctgaat 479
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cacagagttcataaaagaagactatttaggatcattttaaattcaacttaaaagctgaat 214
Query: 480 ctcatttttgtct 492
|||||||||||||
Sbjct: 213 ctcatttttgtct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 893
Length adjustment: 10
Effective length of query: 482
Effective length of database: 883
Effective search space: 425606
Effective search space used: 425606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
