Query= MSMg01no522_m24.b1 MSMg01no522_m24.b1 CHROMAT_FILE:
MSMg01no522_m24.b1 PHD_FILE: MSMg01no522_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:31 2005
(591 letters)
>mm_chr18_41114470_41115461
Length = 992
Score = 1114 bits (576), Expect = 0.0
Identities = 585/588 (99%), Gaps = 3/588 (0%)
Strand = Plus / Minus
Query: 6 gaattcttgaaac-ct-tcgtaattgtccagatgatgaataacgtaatttccaaatttgt 63
||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gaattcttgaaacactat-gtaattgtccagatgatgaataacgtaatttccaaatttgt 734
Query: 64 atttactgtagtggaaaccagagaaaaacatccagagataaccaatacaaggtcgtggtt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 atttactgtagtggaaaccagagaaaaacatccagagataaccaatacaaggtcgtggtt 674
Query: 124 tcagcaatgtcagctaatgattgactgctgctttgggtaatgagaatgtgatagatcaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tcagcaatgtcagctaatgattgactgctgctttgggtaatgagaatgtgatagatcaga 614
Query: 184 acagtggtccttcttccctctcacagcaaggtagagcagaatataaaaaggtctgaaata 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 acagtggtccttcttccctctcacagcaaggtagagcagaatataaaaaggtctgaaata 554
Query: 244 gatacagcactcgaggaaatggcctacgtaattcactttcaccaactacgttctccctct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gatacagcactcgaggaaatggcctacgtaattcactttcaccaactacgttctccctct 494
Query: 304 gaatattctgtcacatttaactaacatatcagaaactcatcaatgctatccactgactag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gaatattctgtcacatttaactaacatatcagaaactcatcaatgctatccactgactag 434
Query: 364 agagaacccttaaaatctgatcataccccaaagcctgagtgaaacagctatagaccaagc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agagaacccttaaaatctgatcataccccaaagcctgagtgaaacagctatagaccaagc 374
Query: 424 cttcaagtgatgatcttgaaaggtaactagaaactaaaatatgttttgttgcctgtatta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cttcaagtgatgatcttgaaaggtaactagaaactaaaatatgttttgttgcctgtatta 314
Query: 484 ttttaaaaagaaatataaaagcagattaaaatcctaaatgccagtatatacatgaacata 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttttaaaaagaaatataaaagcagattaaaatcctaaatgccagtatatacatgaacata 254
Query: 544 tttggaactaagtatcttaaaggcacaaataacatggattccttatag 591
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tttggaactaagtatcttaaaggcacaaataacatggattccttatag 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 992
Length adjustment: 10
Effective length of query: 581
Effective length of database: 982
Effective search space: 570542
Effective search space used: 570542
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_m24.g1 MSMg01no522_m24.g1 CHROMAT_FILE:
MSMg01no522_m24.g1 PHD_FILE: MSMg01no522_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:31 2005
(598 letters)
>mm_chr18_40989283_40990280
Length = 998
Score = 1125 bits (582), Expect = 0.0
Identities = 594/598 (99%)
Strand = Plus / Plus
Query: 1 taaattcctatttttttggatattcattgatttctctagatttgaagaatttctgcatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaattcctatttttttggatattcattgatttctctagatttgaagaatttctgcatta 260
Query: 61 gtctaattaaataaattctatgagttttgttgtattttggctctatctcatagatgggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 atctaattaaataaattctatgagttttgttgtattttggctctatctcatagatgtgct 320
Query: 121 ttccaaaactttcccagatttcttgaatggtatgctttcacacacttggcttgtttttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccaaaactttcccagatttcttgaatggtatgctttcacacacttggcttgtttttct 380
Query: 181 gatatttgagtgcagcactttctagatctaatttatcatctctgatgttatttctagtgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatatttgagtgcagcactttctagatctaatttatcatctctgatgttatttctagtgc 440
Query: 241 ttcatcgaatcttatagtgatgctttcttttcagcttttgttatgatttcttggaggagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcatcgaatcttatagtgatgctttcttttcagcttttgttatgatttcttggaggagt 500
Query: 301 tgagtttttctgttactcattattttgtctgatcctctgatgcaatgtgcacaactgtag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagtttttctgttactcattattttgtctgatcctctgatgcaatgtgcacaactgtag 560
Query: 361 gtttggatgcctctcttggttttactttcatatcttattgaataacctatacttgaggac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttggatgcctctcttggttttactttcatatcttattgaataacctatacttgaggac 620
Query: 421 ccagtctccaataccattgactgaatacaaaactagcttttaaaatagaaacaacaacgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccagtctccaataccattgactgaatacaaaactagcttttaaaatagaaacaacaacgt 680
Query: 481 gtgtaagattcagaaatatacttttcagatcacttaaagcctattcatatattaccagtg 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgtaagattcagaaatatactttttagatcacttaaagcctattcatatattaccagtg 740
Query: 541 actatagaccagaaaatgagaaaactattatagtatgtactgtgaagttaaaaattag 598
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 741 actatagaccagaaaatgagaaaactattatagaatgtactgtgaagttaaaaattag 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
