Query= MSMg01no522_p18.b1 MSMg01no522_p18.b1 CHROMAT_FILE:
MSMg01no522_p18.b1 PHD_FILE: MSMg01no522_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:45 2005
(624 letters)
>mm_chr18_64735607_64736629
Length = 1023
Score = 876 bits (453), Expect = 0.0
Identities = 571/649 (87%), Gaps = 63/649 (9%)
Strand = Plus / Minus
Query: 9 gaattcaatagcctcttgttcaaggaacacagaatatagtcaactctagccaagccaaac 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gaattcaatagcctcttgttcaaggaacacagaatatagtcaactctagccaagccaaac 569
Query: 69 aaatgaaggatcagtaataagtcactttatgagcaagatcgtcaagaaaggactccaaag 128
||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 568 aaatgaaagatcagtaataagtcactttatgagcaagatcatcaagaagggactccaaag 509
Query: 129 tcaagtgctaaaaaaagaaatgaaagcccaactcaaaagactttttagtgtgtccacagt 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tcaagtgctaaaaaaagaaatgaaagcccaactcaaaagactttttagtgtgtccacagt 449
Query: 189 taggaaaataacccaatgtacagccaaagccacacatccagatgccaccaagttgtaaat 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 taggaaaataacccaatgtacagccaaagccacacatccagatgccaccaagttgtaaat 389
Query: 249 gttgacaaaggcttttttttccctccttgtaaataaatgaatgggttctgggttggaagt 308
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 388 gttgacaaaggc-tttttttccctccttgtaaataaatgaatgggttctgggctggaagt 330
Query: 309 tacctctggattcacttagagtcaatattgtgaatggaggtgaggttctttgccatccct 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tacctctggattcacttagagtcaatattgtgaatggaggtgaggttctttgccatccct 270
Query: 369 ggtaaatgggcacccttgaagctagggggaagctcagagtacagtgtatgactaccct-- 426
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 269 ggtaaatgggcagccttgaagctagggggaagctcagagtacagtgtatgcctacccttc 210
Query: 427 --------------------------------------tctcacacacacacacacacac 448
|||| | | | | | | |||||
Sbjct: 209 tctctctctctctctctctctctctctctctctctctctctctctctctctctctcacac 150
Query: 449 acacacacacacacacacacacacacacacacgtacgtacgtacgtacgtacgtacgtgc 508
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 149 acacacacacacacacacacacacacacacac------------------acgtacgtgc 108
Query: 509 acacgcgcatgcatgcgcacgcacgcaca--cacacccacaagctctcagcgtaggagca 566
||||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct: 107 acacgcgcatgcacgcgca--cacgcacacgcacacccacaagctctcagcataggagca 50
Query: 567 tctccaccagggccttgaatcttgcatctcttaacagcaaatggagcct 615
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 tctccaccagggccttgaatcttgcatctcttaacagcaaatggagcct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1023
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1013
Effective search space: 621982
Effective search space used: 621982
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_p18.g1 MSMg01no522_p18.g1 CHROMAT_FILE:
MSMg01no522_p18.g1 PHD_FILE: MSMg01no522_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:45 2005
(677 letters)
>mm_chr18_64562089_64563165
Length = 1077
Score = 1189 bits (615), Expect = 0.0
Identities = 663/687 (96%), Gaps = 17/687 (2%)
Strand = Plus / Plus
Query: 1 ctagtgtctagcaagaccccccttttaaaaataaaaattaattaattaattaattctgaa 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ctagtgtctagcaagaccccc-ttttaaaaataaaaattaattaattaattaattctgaa 260
Query: 61 ctctgaaaagttatgcaccatgtcttagataacacagtaatggaataaagacagcaattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgaaaagttatgcaccatgtcttagataacacagtaatggaataaagacagcaattc 320
Query: 121 ttaatgtcttcgccttttgaatggcaggggcccaccatgacacctagctaaacaattagc 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaatgtcttagccttttgaatggcaggggcccaccatgacacctagctaaacaattagc 380
Query: 181 gttgacaataggaatgtgactagtagaaaaattttaaaatgtgcctgctgttcttataaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgacaataggaatgtgactagtagaaaaattttaaaatgtgcctgctgttcttataaa 440
Query: 241 aaccatttatacagactgccatgaactggctgcttcggtttaaccaatccatatcttttg 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 aaccatttatacagactgccatgaactggctgcatcggtttaaccaatccatatcttttg 500
Query: 301 gactaactgtggctgctcaaaagttctgagttgtcagatgt-----ccccncacaaccta 355
||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 501 gactaactgtggctgctcaaaagttctgagttgtcagatgtgttggc-----acaaccta 555
Query: 356 taatctagcactagggaggcagaggtaggaagagctcaagttttgaagccagtatgcact 415
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 taatctaacactagggaggcagaggtaggaagagctcaagttttgaagccagtatgcact 615
Query: 416 gcatggaagactatgtctaaaatcaaggaggaccagcaagatgactcagtgggtaaatgt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 616 gcatggaagactatgtctaaaatcaaggaggaccagcaagatgactcagtgggtaaaggt 675
Query: 476 gctcatgaagcccaatgacctgaattcaatccccaaaacccatatggcaaagggggaatg 535
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 676 gctcatgaagcccgatgacctgaattcaatccccaaaacccatatggcaaaggggaaa-g 734
Query: 536 ccaagtaagtattgcaagtggtcctctgacttttatacgcactgcatggagcacacacaa 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ccaagtaagtattgcaagtggtcctctgacttttatacgcactgcatggagcacacacaa 794
Query: 596 acacacaca-----aacaaacaaattttaaaaagaaaaagaaaaacatttggatgcccag 650
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 795 acacacacataataaacaaacaagttttaaaaagaaaaagaaaaacatttggatgcccag 854
Query: 651 gatctatacccaggaacttgaatgtgc 677
|||||||||||||||||||||||||||
Sbjct: 855 gatctatacccaggaacttgaatgtgc 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
