BAC Information

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BAC

Clone NameMSMg01-523I01
Chromosome18 (Build37)
Map Location 48,139,246 - 48,139,568
singlet/doubletsinglet
Overlap genenone
Upstream geneCommd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284
Downstream geneLOC100042301, EG433182, LOC383326, LOC100042323, LOC545470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523I01.T7 (MSMg01no523_i01.b1)MSMg01-523I01.TJ (MSMg01no523_i01.g1)
ACCAG593806AG593807
length823724
length of high quality
(start - end)
---475 (83 - 557)
definitionCHROMAT_FILE: MSMg01no523_i01.b1 PHD_FILE: MSMg01no523_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:26 2005CHROMAT_FILE: MSMg01no523_i01.g1 PHD_FILE: MSMg01no523_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:57:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATAAGTGGTATTAAAGCGCACAATAGAGTACACACGTTTCTTGAAAGA
TACCGCAACCTCACAAACAGGAGATGGGGGGAAGAAGGGGTGGGAGAAAG
GAGACAGTTAGTGTGTGCGGCCGATAGACCTATTATCTTCGATTTAAACG
TAGGGGCGAGTCTGTGCGAGGGGGTGGTATATATTTGGGGACAAACGCGG
CTGGGGGGCGACGAGGCGCCGAAAAACATCTGAAATATGTGGAATATGGG
AGCCATCTGGTGCCCCTTTCCAAAACCAACGACGCCAGCCACCAATACGA
AAAACACTAGTAAAGATGCGAGGGAACGGAAGATGGAGAGGAAATAGAGA
AAAACCAACAATTTATTGAAAGTGTAAGGTGGGAATAAACCAGAACCCTT
ACCCGCCCTGGGNNATTTNNTGGTCCCNNNNTGANGGAGANCCCCGGGAA
TAGCAAGTTCCTTAAATGCTANGAAGTATCCCGGCGGGAAAATCCTTTGG
NTTTAACCGTTCAGGAACACCACCATTTTTTAAAAAAAAGGAAAAATTTT
TGTTTTCCCCGCCTCGGCNCCCACATATTCCCTTTGAAGACAACTTTGNT
GGAAAATGCAAAAAAAAAAAAAGCGATTTATTCTCCCCTGGGTNGAGGGG
TGGAGTGTTAGGAGGGGAGGGGGGGGAAAGAACTCCCTTTTTTTTTGTGG
CCCCAAAAACCCCCCGAGAAGGGGGGGGGGGCCCCCAAAAAAAAAAAAAA
TTTTTTTTGTTTNTTTNNNCGGGGTTTTTTNTTTAGACAACAAAAAAAAA
AAGGAGGGTTGTGGGTTTTTTTT
AGGGGGTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCATACTTTCTACCACA
CTAGACTGCTGAAGTTAGGACCTGGTTCTTCCTCCCAGCCTCATGCTCCC
AGAAATAAGACTCAGACTGAAAACACCTTGGCTATGCTCTTTGCTGACTA
TACATAAGAAAAATATTCAATTTATTTTAGCCTACATTCTGCCAAGTAGC
TGGTTACCAATGTGCAGGTACCATCCATCTGTCTCATCACATCTTCATGG
CAAATCTCCCACCTGGCTCTATCCCAGAATCCTTTCTCTCTCCTGGATGT
CCCACCTCAATTTCCTGCCTAAACCATAGGCTTTTTAATTGAAAGGTGAT
GCATCCATAAAATACACAAGATATTCTCTCTACACTGGATGATATTCTCC
ATCTCTCTCTGGAGATGCCATTCAGTTCAGGCTGGTGTATTTACAATCAA
GTAAGTAAGCAATTAAAAATAGGACTCAAAGATTTTTAGATCATAAATGA
ATGGCATTCTGTAGATCATAGACAAATAAAGTGAAATCTTAACTGAATTA
ACTTCTCATTTTAGAAAAGACTATGTCACTTTCCTGAGCTGTTAAGAATG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAATTAACGAAACTA
AGCTATTATTTAAAAGGGGCTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_i01.g1 MSMg01no523_i01.g1 CHROMAT_FILE:
MSMg01no523_i01.g1 PHD_FILE: MSMg01no523_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:26 2005
         (475 letters)



>mm_chr18_48138694_48139568
          Length = 875

 Score =  594 bits (307), Expect = e-174
 Identities = 319/323 (98%)
 Strand = Plus / Minus

                                                                       
Query: 153 cattctgccaagtagctggttaccaatgtgcaggtaccatccatctgtctcatcacatct 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 cattctgccaagtagctggttaccaatgtgcaggtaccatccatctgtctcatcacatct 816

                                                                       
Query: 213 tcatggcaaatctcccacctggctctatcccagaatcctttctctctcctggatgtccca 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tcatggcaaatctcccacctggctctatcccagaatcctttctctctcctggatgtccca 756

                                                                       
Query: 273 cctcaatttcctgcctaaaccataggctttttaattgaaaggtgatgcatccataaaata 332
           |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 755 cctcaatttcctgcctaagccataggccttttaattgaaaggtgatgcatccataaaata 696

                                                                       
Query: 333 cacaagatattctctctacactggatgatattctccatctctctctggagatgccattca 392
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 695 cacaagatattctctctacactggatggtattctccatctctctctggagatgccattca 636

                                                                       
Query: 393 gttcaggctggtgtatttacaatcaagtaagtaagcaattaaaaataggactcaaagatt 452
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gttcagactggtgtatttacaatcaagtaagtaagcaattaaaaataggactcaaagatt 576

                                  
Query: 453 tttagatcataaatgaatggcat 475
           |||||||||||||||||||||||
Sbjct: 575 tttagatcataaatgaatggcat 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)