Query= MSMg01no523_o19.b1 MSMg01no523_o19.b1 CHROMAT_FILE:
MSMg01no523_o19.b1 PHD_FILE: MSMg01no523_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:00 2005
(584 letters)
>mm_chr18_78144867_78145850
Length = 984
Score = 1069 bits (553), Expect = 0.0
Identities = 577/587 (98%), Gaps = 6/587 (1%)
Strand = Plus / Minus
Query: 1 gaattcttctacat-t--tcccgcgacattttccagccatgagccaggctccaagagttt 57
|||||||||||||| | | || |||||||||||||||||||||||||||||||||||
Sbjct: 784 gaattcttctacatatgat---gcaacattttccagccatgagccaggctccaagagttt 728
Query: 58 gagctgttctttagtgaagggtgccacttctggttgagacgggagttctgggtagagtcg 117
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 727 gagctgttctttagtgaagggtgtcacttctggttgagacgggagttctgggtagagtcg 668
Query: 118 ctcactacggagcaatggcttcactgccaccagagctggtacttcagcaatttcagctgg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ctcactacggagcaatggcttcactgccaccagagctggtacttcagcaatttcagctgg 608
Query: 178 caactcaggatatagtttcttcactctcggtggctgagaaacttctttggcttcataaga 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 caactcaggatatagtttcttcactctcggtggctgagaaacttctttggcttcataaga 548
Query: 238 actgtgcaagctaacattctgaaacacctttgaacagccgagggcggcttcatcttgctt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 actgtgcaagctaacattctgaaacacctttgaacagccgagggcggcttcatcttgctt 488
Query: 298 cctagtcggatgttctctggcatgtgagccctccactgcctgctgagtgcagggaaagtc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cctagtcggatgttctctggcatgtgagccctccactgcctgctgagtgcagggaaagtc 428
Query: 358 aggctgcagtgtgctttctggaggcccacactggatgagtgtgtggtcctctacttccgg 417
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aggctgcagtgtgctctctggaggcccacactggatgagtgtgtggtcctctacttccgg 368
Query: 418 gaagttcttgcaaggttcacctttagctataacgttgtccccagggtccaccttcaactc 477
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gaagttcttacaaggttcacctttagctataacgttgtccccagggtccaccttcaactc 308
Query: 478 catttcatcatctccatcaccggctgtgacctctcccctttcttttaggtcctctgtgtc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 catttcatcatctccatcaccggctgtgacctctcccctttcttttaggtcctctgtgtc 248
Query: 538 ctgtaccgggggaccttcatcccctatagtcaaggaggtgagtggta 584
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ctgtaccgggggaccttcatcccctatagtcaaggaggtgagtggta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_o19.g1 MSMg01no523_o19.g1 CHROMAT_FILE:
MSMg01no523_o19.g1 PHD_FILE: MSMg01no523_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:00 2005
(526 letters)
>mm_chr18_77965705_77966629
Length = 925
Score = 953 bits (493), Expect = 0.0
Identities = 516/525 (98%), Gaps = 5/525 (0%)
Strand = Plus / Plus
Query: 1 tcatcaccagaggaaaccctacctaaatcaaaactgtgaagttggagcatgtcctagtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tcatcaccagaggaaaccctacctaaatcaaaactgtgaagttggagcatgtcctagtta 264
Query: 61 gggtcactattgctatagtgagatagaacatgctacctaccatgatcaaaagcgagtcgg 120
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 265 gggtcactattgctatagtgagatagaacatgc--c--accatgatcaaaagcgagtcgg 320
Query: 121 gaaggaaagggttagatatcctcaggcacagtcctttgagggaagccaaagtagagcttc 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaggaaagggttagatatcctcagtcacagtcctttgagggaagccaaagtagagcttc 380
Query: 181 aaaccagtcaggaatggtggaggggcgttgcctacttgctcagccggctgtcttatagga 240
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 aaaccagtcaggaatggtggaggggcactgcctacttgctcagccggctgtcttatagga 440
Query: 241 cctagaaccgtcagcccaaagagggcaccacccacatggactgagcctccctccatcaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctagaaccgtcagcccaaagagggcaccacccacatggactgagcctccctccatcaat 500
Query: 301 cactaagaaaatgttctccaggcttacatacggctggatctcacagaggtattttctcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactaagaaaatgttctccaggcttacatacggctggatctcacagaggtattttctcca 560
Query: 361 ttgaggtccccttctctcagataactattgtgttagaatcaccacggcttgcaaccagac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgaggtccccttctctcagataactattgtgttagaatcaccacggcttgcaaccagac 620
Query: 421 agatcacaccaagccaataccaagccaatacagttccactccacgtgggggaagagggca 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agatcacaccaagctaataccaagccaatacagttccactccacgtgggggaagagggca 680
Query: 481 aaggtagccacaaagatgaaggagaagggggtgggcggggggaga 525
||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 aaggtagccacaaagatgaaggagaagggggtggg-ggggggaga 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 925
Length adjustment: 10
Effective length of query: 516
Effective length of database: 915
Effective search space: 472140
Effective search space used: 472140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
