Query= MSMg01no524_d19.b1 MSMg01no524_d19.b1 CHROMAT_FILE:
MSMg01no524_d19.b1 PHD_FILE: MSMg01no524_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:27 2005
(487 letters)
>mm_chr18_51297097_51297983
Length = 887
Score = 895 bits (463), Expect = 0.0
Identities = 478/483 (98%)
Strand = Plus / Minus
Query: 5 gaattcagaataaaattaaacaaagaaactgaatattaatttgtcagttcaatttaccat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gaattcagaataaaattaaacaaagaaactgaatattaatttgtcagttcaatttaccat 628
Query: 65 tttgtgatagatttatgcttgtgattattgtattctaaattcactgatttatcaattacg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 627 tttgtgatagatttatgcttgtgattattgtattctaaattcactgatttatcaagtacg 568
Query: 125 cataacaaagttggttaccaaggtttgtagtctagacagtaagccattccttacaaatag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cataacaaagttggttaccaaggtttgtagtctagacagtaagccattccttacaaatag 508
Query: 185 tagtttcaaaatgggaataacactaaaaccttatgtgtatacccactcaacctcctacct 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 507 tagtttcaaaatgggaataacactaaaaccttatgtgtatacccactcaacctcctgcct 448
Query: 245 aagttcctacagagcgagaagaagagacagtaatgcatagcattggcaaggcattgccaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 447 aagttcctacagagcgagaagaagagacagtaatgcatagcattggcaaggaattgccaa 388
Query: 305 tgccatgtcaacagattgccaagaaaataaattgtggaaccttccttctgaagccacttc 364
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgccatgtcaacagattgccatgaaaataaattgtggaaccttccttctgaagccacttc 328
Query: 365 aggaaacttaaagtgttagcagagaaacatgctgaaggaaacctagtcatagttcaacca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aggaaacttaaagtgttagcagagaaacatgctgaaggaaacctagtcatagttcaacca 268
Query: 425 tcatctaccagtgtcctagccactcatgagtgatgtgcaagctatgtcactgcttccact 484
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 267 tcatctaccagtgtcctagccactcatgagtgatgtgcaagctatgtcacggcttccact 208
Query: 485 tag 487
|||
Sbjct: 207 tag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_d19.g1 MSMg01no524_d19.g1 CHROMAT_FILE:
MSMg01no524_d19.g1 PHD_FILE: MSMg01no524_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:27 2005
(675 letters)
>mm_chr18_51194629_51195705
Length = 1077
Score = 1181 bits (611), Expect = 0.0
Identities = 659/693 (95%), Gaps = 30/693 (4%)
Strand = Plus / Plus
Query: 1 tttacccaatattaatatctctgcaaccaaaatctgtgtgcatgatgaccaaattctagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tttacccaatattaatatctctgcaaccaaaatctgtgtgcatgatgaccaaattctagg 256
Query: 61 aaaggccttctcttttgttactaatgtcttcttttaaaattattattattattatt---- 116
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 257 aaaggccttttcttttgttactgatgtcttcttttaaaattattattattattatttatt 316
Query: 117 ---------attattattattattattactgtgtatggtgttttggaaatccttggccca 167
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 attattattattattattattattattactgtgtatggtgttttggaaatccttggccca 376
Query: 168 gggaatggcattattaggaggtatggtcatgttggagtggatgtgaccttgttggaggaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gggaatggcattattaggaggtatggtcatgttggagtggatgtgaccttgttggaggaa 436
Query: 228 atatgtcactgtgtgtttgggcattgagacccttctcctagctccctggaatccattctt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atatgtcactgtgtgtttgggcattgagacccttctcctagctccctggaatccattctt 496
Query: 288 ttcctatttgcctttggaataagatgtagactctcatttcctcctgtgtcatgcctgtct 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttcctatttgcctttggaataagatgtagactctcatttcctcctgtgtcatgcctgtct 556
Query: 348 agacactgctatact-----cccaccctgatgataatggactgaacctgtaagccagacc 402
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agacactgctatactatactcccaccctgatgataatggactgaacctgtaagccagacc 616
Query: 403 caataaaatgttgtcatatatatgaatacatatatatattcatatatatattcctttgtt 462
||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 617 caataaaatgttgtcatatatatgaatacatatatatattc------------ctttgtt 664
Query: 463 tttaattatgaataatgactattgaaatcaccactcagggactccttttcaattattaag 522
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tttaatcatgaataatgactattgaaatcaccactcagggactccttttcaattattaag 724
Query: 523 tcatgaatataacaatcaaaatgactaggatgtttacttatatcccaggttgctcctcag 582
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tcatgaatatcacaatcaaaatgactaggatgtttacttatatcccaggttgctcctcag 784
Query: 583 tactttacatctatttaattatactctcacaaacatcagtagaagatcagtagcattctt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tactttacatctatttaattatactctcacaaacatcagtagaagatcagtagcattctt 844
Query: 643 gtccccacttgacaaataagtcaggatttgaaa 675
|||||||||||||||||||||||||||||||||
Sbjct: 845 gtccccacttgacaaataagtcaggatttgaaa 877
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1077
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1067
Effective search space: 709555
Effective search space used: 709555
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
