Query= MSMg01no524_o17.b1 MSMg01no524_o17.b1 CHROMAT_FILE:
MSMg01no524_o17.b1 PHD_FILE: MSMg01no524_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:20 2005
(665 letters)
>mm_chr18_77853501_77854565
Length = 1065
Score = 1104 bits (571), Expect = 0.0
Identities = 602/615 (97%), Gaps = 6/615 (0%)
Strand = Plus / Plus
Query: 53 acacacacatacac--acacacactcacatacacatatacacacacacacatacacacac 110
|||||||||||||| |||||||| |||| |||| ||||||||||||| ||||||||
Sbjct: 255 acacacacatacacatacacacacacacacacac----acacacacacacacacacacac 310
Query: 111 acacaaagactacaaagactagccacttgacggacagttgaaaggtttctcaaaaagtct 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 acacaaagactacaaagactagccacttgacggacagttgaaaggtttctcaaaaagtct 370
Query: 171 ccagtattttattttcctaccagcagggaataagaaccagtttctccatttccccaacac 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ccagtattttattttcctaccagcagggaataagaaccagtttctccatttccccaacac 430
Query: 231 ctaatgccacctgactcttaaatacaaacttaaattttttattggtggaaataatatggg 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctaatgccacctgactcttaaatacaaacttaaattttttattggtggaaataatatggg 490
Query: 291 ggtttattatggtttacacatcccaagccacactccatgaagagaagccaagacaaaact 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ggtttattatggtttacacatcccaagccacactccatgaagagaagccaagacaaaact 550
Query: 351 caaggcagggagcagaggccatgaaggagcactgctcaccagtttgttcccccgggcttg 410
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 551 caaggcagggagcagagaccatgaaggaacactgctcaccagtttgttcccccgggcttg 610
Query: 411 cccagtttgattccctatgtaacccaacaccaccttcccggggatggcactgcccacatc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cccagtttgattccctatgtaacccaacaccaccttcccggggatggcactgcccacatc 670
Query: 471 agttgccaatcaagaaaatgccctacgggcttgtctacagctgacctgaggggacatttt 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 agttgccaatcaagaaaatgccctacgggcttgtctacagctgacctgaggggacatttt 730
Query: 531 ctcaacggaggttccctttgctcaaataacttgagcttcaagttgtcaaaacaattcatg 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ctcaacggaggttccctttgctcaaataacttgagcttcaagttgtcaaaacaattcatg 790
Query: 591 ccacatctactgtgtctgtcctctgcactcaacaatggtcacatcctcccccaaatagag 650
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 791 ccacatctactgtgtctatcctccgcactcaacaatggtcacatcctcccccaaatagag 850
Query: 651 gcctttctgccttca 665
|||||||||||||||
Sbjct: 851 gcctttctgccttca 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_o17.g1 MSMg01no524_o17.g1 CHROMAT_FILE:
MSMg01no524_o17.g1 PHD_FILE: MSMg01no524_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:20 2005
(611 letters)
>mm_chr18_78045416_78046426
Length = 1011
Score = 940 bits (486), Expect = 0.0
Identities = 519/530 (97%), Gaps = 1/530 (0%)
Strand = Plus / Minus
Query: 1 ttaaatttgaagtttatgagtgaggtcagacatttttccatgttcacacaattccctcct 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 530 ttaaatttgaagtttatgagtgaggtcagacatttttccatgttcaaacaattccctcct 471
Query: 61 gttctcttttgataattagggagatcacttttaaatcaggattaggaggtgggtgggaaa 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 470 gttctcttttgagaattagggagatcacttttaaatcaggattaggaggtgggtggggaa 411
Query: 121 aagaaaagagcctctgctccaaggtacggcccaacatcccctgctaccttccgaatcaca 180
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 410 aagaaatgagcctctgctccaaggtacggcccaacaacccctgctaccttccgaatcaca 351
Query: 181 tgactcccagcttcagagcacacaactgactccgattggtggagacgaatgccagtctct 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 350 tgactcccagcttcagagcacacaaatgactccgattggtggagacgaatgccagtctct 291
Query: 241 cagacgagtgactctgattggtggagacgaatgccagttagacattttcgctgccattgc 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 290 cagacgagtgactctgattggtggagacgagtgccagttagacattttcgctgccattgc 231
Query: 301 tgtttatcatgaactactttctatgttaaggaattatttataatatttatcttttattat 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 230 tgtttatcatgaactactttctatgttaagaaattatttataatatttatcttttattat 171
Query: 361 ttatttac-aaaaatagaattattgataatgcttttttgcacctctttaagctttatccc 419
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ttatttacaaaaaatagaattattgataatgcttttttgcacctctttaagctttatccc 111
Query: 420 aagcccagtgcctctcaccttagtcctgaccctgccgctttccccagttcaaaagactat 479
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 110 aagcccagtgcctctcaccttagtcctgaccctgctgctttccccagttcgaaagactat 51
Query: 480 tctttccggggagcttcctggaatggtagattactaaaataacatcatgc 529
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 tctttccggggagcttcctggaatggtagattactaaaataacatcatgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
