Query= MSMg01no525_c12.b1 MSMg01no525_c12.b1 CHROMAT_FILE:
MSMg01no525_c12.b1 PHD_FILE: MSMg01no525_c12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:40 2005
(559 letters)
>mm_chr18_54603222_54604180
Length = 959
Score = 915 bits (473), Expect = 0.0
Identities = 539/565 (95%), Gaps = 12/565 (2%)
Strand = Plus / Plus
Query: 5 aacttaaaagtttagagagtggaagacaagggaaaa---t-tctatctgtcaatctaatc 60
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 199 aacttaaaagtttagagagtggaagacaagggaaaagtctatctatctgtcaatctaatc 258
Query: 61 taatctaatctaatctaatctaatctaatct-atct-atctatctatctatctatctatc 118
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||
Sbjct: 259 taatctaatctaatctaatctaatctaatctaatctaatctatctatctatctatccatc 318
Query: 119 tatctatctatctatcacctgcctgtcgatctctctatatctcattgttataatgttttt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tatctatctatctatcacctgcctgtcgatctctctatatctcattgttataatgttttt 378
Query: 179 gaataaaataccaatgtttctacttgttttttagttaaggcgacatgggaaaaatgggct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gaataaaataccaatgtttctacttgttttttagttaaggcgacatgggaaaaatgggct 438
Query: 239 ggaaataaatactaagataactccagacttcctcacataatttgagcaaagagtgatgct 298
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggaaataaatacaaagataactccagacttcctcacataatttgagcaaagagtgatgct 498
Query: 299 ctggctataacccagtaatattgaaatcctaaaatcattattgtgttctctgtctctgtc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctggctataacccagtaatattgaaatcctaaaatcattattgtgttctctgtctctgtc 558
Query: 359 tgtctctctgtctgtctttctttctgtctctgtctctgtctctgtctctctctcaatata 418
||||||||||||| |||||||||||||||||||||||||||||| |||| |||| | |
Sbjct: 559 tgtctctctgtctttctttctttctgtctctgtctctgtctctgcctctgtctc--tgtc 616
Query: 419 tatatatatatat----atatatatatatatatatatatatatatatatatatatatcca 474
| | | | | | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tctctctgtctctctcaatatatatatatatatatatatatatatatatatatatatcca 676
Query: 475 tctctcttctatctccttctttatgtcttatgccaggtatctttctgaattgctatcttg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tctctcttctatctccttctttatgtcttatgccaggtatctttctgaattgctatcttg 736
Query: 535 cttttctaagaaagatctctcactg 559
|||||||||||| ||||||||||||
Sbjct: 737 cttttctaagaaggatctctcactg 761
Score = 78.1 bits (40), Expect = 2e-18
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 432 atatatatatatatatatatatatatatatatatatatat 471
||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atatatatatatatatatatatatatatatatatatatat 634
Score = 78.1 bits (40), Expect = 2e-18
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 430 atatatatatatatatatatatatatatatatatatatat 469
||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atatatatatatatatatatatatatatatatatatatat 634
Score = 78.1 bits (40), Expect = 2e-18
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 428 atatatatatatatatatatatatatatatatatatatat 467
||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atatatatatatatatatatatatatatatatatatatat 634
Score = 78.1 bits (40), Expect = 2e-18
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 426 atatatatatatatatatatatatatatatatatatatat 465
||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atatatatatatatatatatatatatatatatatatatat 634
Score = 78.1 bits (40), Expect = 2e-18
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 424 atatatatatatatatatatatatatatatatatatatat 463
||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atatatatatatatatatatatatatatatatatatatat 634
Score = 78.1 bits (40), Expect = 2e-18
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 422 atatatatatatatatatatatatatatatatatatatat 461
||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atatatatatatatatatatatatatatatatatatatat 634
Score = 78.1 bits (40), Expect = 2e-18
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 420 atatatatatatatatatatatatatatatatatatatat 459
||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atatatatatatatatatatatatatatatatatatatat 634
Score = 78.1 bits (40), Expect = 2e-18
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 418 atatatatatatatatatatatatatatatatatatatat 457
||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atatatatatatatatatatatatatatatatatatatat 634
Score = 78.1 bits (40), Expect = 2e-18
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 416 atatatatatatatatatatatatatatatatatatatat 455
||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atatatatatatatatatatatatatatatatatatatat 634
Score = 78.1 bits (40), Expect = 2e-18
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 414 atatatatatatatatatatatatatatatatatatatat 453
||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atatatatatatatatatatatatatatatatatatatat 634
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 110
Number of extensions: 53
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 15
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_c12.g1 MSMg01no525_c12.g1 CHROMAT_FILE:
MSMg01no525_c12.g1 PHD_FILE: MSMg01no525_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:40 2005
(592 letters)
>mm_chr18_54753130_54754121
Length = 992
Score = 1114 bits (576), Expect = 0.0
Identities = 588/592 (99%), Gaps = 1/592 (0%)
Strand = Plus / Minus
Query: 1 tagtttttcaatgactacagcagcagaaataatgtgaatggcagagaagtgaggcattgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tagtttttcaatgactacagcagcagaaataatgtgaatggcagagaagtgaggcattgg 664
Query: 61 actcaaggcaaaacataaaatccatctgcctcttctctggctgtgaagttccaggtgact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 actcaaggcaaaacataaaatccatctgcctcttctctggctgtgaagttccaggtgact 604
Query: 121 ttgctgagtataaagtccctttacgtattttacataaagaaaggcagagtgctttcctat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ttgctgagtataaagtccctttacgtattttacataaagaaaggcagagtgctttcctat 544
Query: 181 atgggctgaggcacagggattctatccaggaagtgtttgaaaagtctgatgggtacacgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 atgggctgaggcacagggattctatccaggaagtgtttgaaaagtctgatgggtacacgg 484
Query: 241 aactatatacttggggatagaatgaccacaaaaaggaagggaagcaagcagcaaaaggcc 300
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 483 aactatatacttggagatagaatgaccacaaaaaggaagggaagcaagcagcaaaacgcc 424
Query: 301 ctcttatttgtaccaataaaatataagtacatgtgatttcattatgaacagcatcaggct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctcttatttgtaccaataaaatataagtacatgtgatttcattatgaacagcatcaggct 364
Query: 361 ggatttgtagcgtgtgactttctaaaatgtaaaatgcaataatccagagagaaagctgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggatttgtagcgtgtgactttctaaaatgtaaaatgcaataatccagagagaaagctgtt 304
Query: 421 cctcttgcaaccaagccccaggagtatatttgtgtatgtcaggattaaaagcaaatagat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cctcttgcaaccaagccccaggagtatatttgtgtatgtcaggattaaaagcaaatagat 244
Query: 481 ataaacagaaatgcttgctctcatcacattcttgaaatggaactaatttttttttatata 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 243 ataaacagaaatgcttgctctcatcacattcttgaaatggaactaa-ttttttttatata 185
Query: 541 ttaacaaaacctgccctgcctgtgtgccacctacattagcccaataatttat 592
|||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 184 ttaacaaaacctgccctgcctgtgtgccacctgcattagcccaataatttat 133
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
