Query= MSMg01no525_g23.b1 MSMg01no525_g23.b1 CHROMAT_FILE:
MSMg01no525_g23.b1 PHD_FILE: MSMg01no525_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:03 2005
(531 letters)
>mm_chr18_28155965_28156895
Length = 931
Score = 946 bits (489), Expect = 0.0
Identities = 513/521 (98%)
Strand = Plus / Plus
Query: 4 ggaattcattccggtttagctcatagtcaatgcaatacaatgggagttaaagacagcagc 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 204 ggaattcattccggtttagctcatagtcaatgcaatacaatgggagttaaagacagcacc 263
Query: 64 agttcagtggatttccttcaatgtttttgattaggaaggaatctaggaagaaggacttaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agttcagtggatttccttcaatgtttttgattaggaaggaatctaggaagaaggacttaa 323
Query: 124 atgtaaaacatttttagagatatataaaagcatgaaagtgtgatgtagcaatagcttgtt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgtaaaacatttttagagatatataaaagcatgaaagtgtgatgtagcaatagcttgtt 383
Query: 184 gagtgtgaatctcagcagtgagaccacacagaagtttgacatgcaggctggtctcaggta 243
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagtgtgaatctcagcagtgaaaccacacagaagtttgacatgcaggctggtctcaggta 443
Query: 244 ttttgtaacttagtgttcatattttgtgtcattgctgttgatccatgatgtttctaaaat 303
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttttgtaacttactgttcatattttgtgtcattgctgttgatccatgatgtttctaaaat 503
Query: 304 ttctaagaatcgtgtcaatgaaactgtgtgataaactactcaattggctctgacaatggt 363
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 504 ttctaagaatcgtgtcaatgaaactgtgtgataaactcctcaattggctctgacaatggt 563
Query: 364 ataagagacatgatggtgcaatcctgtaaactcttcattacgattgcagattcaaaatca 423
||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 564 ataagcgacatgatggtgcaatcctgtaaactctgcactacgattgcagattcaaaatca 623
Query: 424 cacttttgagtatgaggccagattgtactatgctgtgagtggcaggtcatttatggttac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 624 cacttttgagtatgaggccagattgtactatgctgtgagtggcaggtcatttatgtttac 683
Query: 484 accattgcaatttattaattaaaataataaataaataaata 524
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 accattgcaatttattaattaaaataataaataaataaata 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_g23.g1 MSMg01no525_g23.g1 CHROMAT_FILE:
MSMg01no525_g23.g1 PHD_FILE: MSMg01no525_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:03 2005
(569 letters)
>mm_chr18_28345222_28346191
Length = 970
Score = 804 bits (416), Expect = 0.0
Identities = 522/566 (92%), Gaps = 17/566 (3%)
Strand = Plus / Minus
Query: 14 atcagcgcactgggaagtgcagtgcctataatgtttggtgagtctgtgaaggctccaagg 73
||||||||||||||||||||||||| | |||| ||||| |||| ||||||||| ||||||
Sbjct: 612 atcagcgcactgggaagtgcagtgcttgtaatatttggcgagtttgtgaaggccccaagg 553
Query: 74 ctgttgcagctcctcgacctgaccagttggtcaatctcttacagagcatcgccctggatg 133
|||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||
Sbjct: 552 ctgttgcagctcctcgacctgaccggttggtcaatctcttaaagagcatcaccctggatg 493
Query: 134 atgccagtgctccaggtctaatggttctttgtcagccaaggagaccagataactcaatgg 193
|| ||||||||||| ||||||| |||||||||||||||||| ||||||||| |||||| |
Sbjct: 492 attccagtgctccacgtctaattgttctttgtcagccaaggggaccagatagctcaatag 433
Query: 194 gatttggtgcagaaagaaagatccatcaagctggtgtcattgactaaccacatccacaca 253
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 432 gatttggtgcagaaagaaagatccatcaagctggtgtcattgactaaccacatccacaaa 373
Query: 254 gcacatcattaatccactatagtcaagttggggggattctggtgaagggttctgaataac 313
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 372 gcacatcattaatccactatagtcaagttgggggtattctggtgaagggttctgaataac 313
Query: 314 tcccgcttcattcctcacaaaatctggaatacttattctattgagctattacaccagttt 373
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 312 tcccgcttcattcctcacaaaatctggaatacttattctactgagcttttacaccagttt 253
Query: 374 taacaccttcctcatggtatgtttaaagaaaaaa---------aaatttaagaaaccatt 424
||||||||||||| || |||||| |||||||||| |||||||||||||||||
Sbjct: 252 taacaccttcctcgtgttatgttaaaagaaaaaataaataaataaatttaagaaaccatt 193
Query: 425 ttaaaatttaaaaaaaaagaagaagaagaaagaaaaaggcaggtaagattaaccaggagc 484
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 192 ttaaaatt----aaaaaagaagaagaa---agaaaaaggcaggtaagattaaccaggagt 140
Query: 485 cacctgtctccttttatcttgaca-cccaagcaatatgcctaaactctgcctaatttcca 543
| ||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 139 cgcctgtctccttctatcttgacaacccaagcaatatgcctaagctctgcctaatttcca 80
Query: 544 tttggaaacaattcttcatgaacttg 569
| ||||||||||||||||||||||||
Sbjct: 79 tatggaaacaattcttcatgaacttg 54
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 970
Length adjustment: 10
Effective length of query: 559
Effective length of database: 960
Effective search space: 536640
Effective search space used: 536640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
