XXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCCTAG
GATGACCAATAAAGATTAAAGAATTAAAGGATGATGTATAAGCATATAGA
AAGTTAATACTTTGTTCTCCTAGTTACTTGAAGAATTGGAGATGGTAATG
GCTAGAGAGATATTAGTGAGAGCTAGCCACTTTACTTACATAAATTTTAA
AACTTCATTAGAAATCCTTTTAACCCTAGTAGTCTGTCACCTTTCTGTTT
TCACATGAAACCCATTAGTAAAGACTGCTGCCTACTGTACCAGGAAACCA
TAAGAGCTGTGCCCAGCTATCCATGAAGAACAAGCTGTGTAAACCAATAA
GGAACCATGCTTTTGCTTTGTTTTTGGCTTCTGTTTTAAAGAAGGAGGGG
TTGGGACTAATGATCTGGGGTTCATAGAAGTTGCATAAATTTAAGGATTT
CTAGAATAATTACTAATAATTACCAAAGACTTGTTTATGTAACTTTAGTC
GATAAAAGAGTCGGTTAAGGCTGTCTGGTTGGGAGAAGGCAGAAGAAGGA
AGAAAGGAGAATGAAGTATGGTGAGAATCTTTGGGCAAAGAGAGAGAGCA
CTTGAGTTCACAGCTTGCATTCATTGACTGAGTCAATATTAGATTAGGGT
CTTCTCAGGACCTTCCTCATGCTGAGGCAGGATCTCAGCACCTCATGTCC
TCTCCCACACTCTCATGACCCACTTAAGCTTTCTTGATAGGA

CACTGACTGCCCTTCCCCTTTNNNNCCNNNNNNTTCCCNATTCTNNNCTC
TTTNCNNNCNNATTANNNNNCTAAACTCNCTTTTTNNCCNCANTCCTCCC
CCTNNCACNNCNCCCCTCCTGGTTCCCCTCCGCTCCCGNNNNNTTCTCCC
CTTCCTCCAAACTTTCCCAAAACCCCTCNGGGAACCCCCTAGCCCCNTTT
TANNGAACCCCCCAAANNCCAAANTTTTTCCATTCCCCCTTCCCCCCCCN
NNGCCCNAAAACCCCCNNTCCCCCCAAAAACTTCTTTTTTTCTTTTCCCC
AAAAATTCCCCCCCGTTCCCCCCCCCTNCTTCTNCCCTTCNNNACACCCC
CCCCCCCCCCCTCTTNCAAAAAAATTTCCCTTCCTTTTCCCCCTNCCCCC
CCCCNAAACCCTCTAAAAAAAAAAAAAAAAACCTNTTATCCCCCGGCAAA
AAAANCTCCCTTAAAAAAAAAAAAAACCCTCCCAACCCCTTTTTNNNNTN
TNNGGGGCCTCCTCATACCATAACTCTTTCTACCTAGTTTTTTTTTTTNN
TNCTCNCNNNNTACCCCCTCCNTCACCCCTTTCCCTTTTTTCCNCCCCCC
CCCNCCCTTTTTTNATTCTTTTTTTTGTATTTGACTCAA

Query= MSMg01no525_m11.b1 MSMg01no525_m11.b1 CHROMAT_FILE:
MSMg01no525_m11.b1 PHD_FILE: MSMg01no525_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:30 2005
         (588 letters)



>mm_chr18_85421028_85422015
          Length = 988

 Score = 1091 bits (564), Expect = 0.0
 Identities = 582/588 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggctagagagatattagtgagagctagccactttacttacataaattttaaaacttca 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 788 atggctagagagatattagtgagagctagcaactttacttacataaattttaaaacttca 729

                                                                       
Query: 61  ttagaaatccttttaaccctagtagtctgtcacctttctgttttcacatgaaacccatta 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ttagaaattcttttaaccctagtagtctgtcacctttctgttttcacatgaaacccatta 669

                                                                       
Query: 121 gtaaagactgctgcctactgtaccaggaaaccataagagctgtgcccagctatccatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gtaaagactgctgcctactgtaccaggaaaccataagagctgtgcccagctatccatgaa 609

                                                                       
Query: 181 gaacaagctgtgtaaaccaataaggaaccatgcttttgctttgtttttggcttctgtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gaacaagctgtgtaaaccaataaggaaccatgcttttgctttgtttttggcttctgtttt 549

                                                                       
Query: 241 aaagaaggaggggttgggactaatgatctggggttcatagaagttgcataaatttaagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aaagaaggaggggttgggactaatgatctggggttcatagaagttgcataaatttaagga 489

                                                                       
Query: 301 tttctagaataattactaataattaccaaagacttgtttatgtaactttagtcgataaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tttctagaataattactaataattaccaaagacttgtttatgtaactttagtcgataaaa 429

                                                                       
Query: 361 gagtcggttaaggctgtctggttgggagaaggcagaagaaggaagaaaggagaatgaagt 420
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 428 gagtcagttaaggctgtctggttgggagaaggcagaagaaggaagaaaggagaaggaagt 369

                                                                       
Query: 421 atggtgagaatctttgggcaaagagagagagcacttgagttcacagcttgcattcattga 480
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 368 atggtgagaatctttgggcaaagagagagagcacttgagttgacagcttgcattcattga 309

                                                                       
Query: 481 ctgagtcaatattagattagggtcttctcaggaccttcctcatgctgaggcaggatctca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ctgagtcaatattagattagggtcttctcaggaccttcctcatgctgaggcaggatctca 249

                                                           
Query: 541 gcacctcatgtcctctcccacactctcatgacccacttaagctttctt 588
           ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 248 gcacctcatgtcctctcccacactctcatgacccactcaagctttctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)