Query= MSMg01no526_k17.b1 MSMg01no526_k17.b1 CHROMAT_FILE:
MSMg01no526_k17.b1 PHD_FILE: MSMg01no526_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:40 2005
(658 letters)
>mm_chr18_13302340_13303398
Length = 1059
Score = 1185 bits (613), Expect = 0.0
Identities = 645/656 (98%), Gaps = 1/656 (0%)
Strand = Plus / Minus
Query: 4 ggaattctactcaaatttccctgatttaaatgtccatccccaaacatgctccccttgatg 63
|||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 859 ggaactctactcaaacctccctgatttaaatgtccatccccaaacatgctctccttgatg 800
Query: 64 aatagagaaacacatgaccacacctgggtatgtgattcagccaggttgactcatggatca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 aatagagaaacacatgaccacacctgggtatgtgattcagccaggttgactcatggatca 740
Query: 124 aaaatagaattaa-ccctaaatcctctggctctcaccaacctcattctacttgatcatgg 182
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 739 aaaatagaattaacccctaaatcctccggctctcaccaacctcattctacttgatcatgg 680
Query: 183 tgttccagtaactttcgtgcttttgaaataaccaaattccagaatcatacgttcttaggg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 679 tgttccagtaactttcgtgcttttgaaataaccaaattccagaatcatacgttcttaagg 620
Query: 243 gaagaagctaggcagggaaacatgatcctcaacaagtgtgttcactgttacttgaattcc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gaagaagctaggcagggaaacatgatcctcaacaagtgtgttcactgttacttgaattcc 560
Query: 303 ccagccataagcctaccggaaaacatttcaaaaccaagaaagaaacaaaatataatttaa 362
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ccagccataagcctaccagaaaacatttcaaaaccaagaaagaaacaaaatataatttaa 500
Query: 363 aacaaccaaatccaagatccccaactcttcaaaagcccaacagcagatcaacttcaccat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aacaaccaaatccaagatccccaactcttcaaaagcccaacagcagatcaacttcaccat 440
Query: 423 aaaataacaatgacattattggtgacccccttggtgagccgcaggtgttagaagcagaat 482
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 439 aaaataacaatgacattattggtgacccccttggtgagtcgcaggtgttagaagcagaat 380
Query: 483 gttgggaatataaatcgctgagaagtgaacataacttacctggaagcctctcagagagcg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gttgggaatataaatcgctgagaagtgaacataacttacctggaagcctctcagagagcg 320
Query: 543 agttctcctcctcagccctagcgttgggtggggctttttgatagagaagagatacattaa 602
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 319 agttctcctcctcagccctagcgttgggtggggctttttgatagagaagagatatattaa 260
Query: 603 tgttcacatttcctgtttgtcttanagtttctgtttcagtatttccagttttaccc 658
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 259 tgttcacatttcctgtttgtcttaaagtttctgtttcagtatttccagttttaccc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1059
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1049
Effective search space: 679752
Effective search space used: 679752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_k17.g1 MSMg01no526_k17.g1 CHROMAT_FILE:
MSMg01no526_k17.g1 PHD_FILE: MSMg01no526_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:40 2005
(665 letters)
>mm_chr18_13165770_13166834
Length = 1065
Score = 1257 bits (650), Expect = 0.0
Identities = 662/666 (99%), Gaps = 2/666 (0%)
Strand = Plus / Plus
Query: 1 agaatagttccaaagttattttagtgtcacagttaggttgctttcagagctatttttaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaatagttccaaagttattttagtgtcacagttaggttgctttcagagctatttttaat 260
Query: 61 ttgtttagaattacaggtactattcccttagtaagtatcgtttcctttgtacccagtatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtttagaattacaggtactattcccttagtaagtatcgtttcctttgtacccagtatt 320
Query: 121 gaagtaataagaatcatgtgtctgctggaagcgagcatgaccaagaagtggtacatgcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagtaataagaatcatgtgtctgctggaagcgagcatgaccaagaagtggtacatgcag 380
Query: 181 cgggacagggacagggacagggacaggttggtcagtgtactgtatagcatggaattggac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgggacagggacagggacagggacaggttggtcagtgtactgtatagcatggaattggac 440
Query: 241 acagtcagcaatcagctgctctacatgtgacagagtaccagagcatcatgtgatcacaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagtcagcaatcagctgctctacatgtgacagagtaccagagcatcatgtgatcacaag 500
Query: 301 agttcacagaaactaggttcctctgtctttgaaaacatttcttttttgaaaaaaattttt 360
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 501 agttcacagaaactaggttcctctgtctttgaaaccattt-ttttttgaaaaaaattttt 559
Query: 361 aaaaaatcattttcactcccttattgttatctcttctgtgagcctggtgctctacctgct 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaaaaatcattttcacttccttattgttatctcttctgtgagcctggtgctctacctgct 619
Query: 421 gggcattatgctctccccttctcatgatggtcagatagggtactcctgtacttcagagga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gggcattatgctctccccttctcatgatggtcagatagggtactcctgtacttcagagga 679
Query: 481 ccgatgcatctcataggagctcctaggagactgtcttttgctatagccacattacttttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ccgatgcatctcataggagctcctaggagactgtcttttgctatagccacattacttttc 739
Query: 541 ttcatagctacatacagcttgtgcttatgttaaaacacaatcagaggacattttgttcat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttcatagctacatacagcttgtgcttatgttaaaacacaatcagaggacattttgttcat 799
Query: 601 tgcccaaaacacagtggttgctcaacaa-cattagtccccttctctttggatttcttgtc 659
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 800 tgcccaaaacacagtggttgctcaacaaacattagtccccttctctttggatttcttgtc 859
Query: 660 tgaaat 665
||||||
Sbjct: 860 tgaaat 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
