Query= MSMg01no526_m12.b1 MSMg01no526_m12.b1 CHROMAT_FILE:
MSMg01no526_m12.b1 PHD_FILE: MSMg01no526_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:48 2005
(606 letters)
>mm_chr18_81743079_81744091
Length = 1013
Score = 969 bits (501), Expect = 0.0
Identities = 567/595 (95%), Gaps = 15/595 (2%)
Strand = Plus / Minus
Query: 19 tctctctttgtatttttgttctttctacaattgttgattacctggacgaactccagaaac 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 tctctctttgtatttttgttctttctacaattgttgattacctggacgaactccagaaac 950
Query: 79 aaatgatattttttgataagataagataaattaaaatactcgtgtgtttaaagttggatt 138
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 949 aaatgatattttttgataagataagataaattaaaatactcatgtgtttaaagttggatt 890
Query: 139 gcatttttgagatctagatttcctctatggcattttagggaaacttcaaaaaatctgttg 198
||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||
Sbjct: 889 gcatttttgagatctagatttcctctacgacattttagggaaacttcaaaaa-tctgttg 831
Query: 199 tctaaatagtgaggggaaagtgagtcactgattgacaggttatgaaagaaggagagaaat 258
||||||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct: 830 tctaaatagtgagt--aa--t---tcactgattgacaggttatgaaagaaggagagaaat 778
Query: 259 acaggagcagctggagattcactaggctctggcaatttgaattaagaactgtttcacaca 318
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 777 acaggagcagctggagattcactaggctctggcaatttgaattaagaactgtctcacaca 718
Query: 319 gagattatgaactctggtatgacattttgactctattttccaa------ggattggcgta 372
||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 717 gagattatgaactctggtatgacattttgactctattttccaaaagtgaggattggcgta 658
Query: 373 ttgtgtacgtgagaaagggaagaaaaggatcacagaaaggtacgcatggccaaacccttc 432
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 657 ttgtgtatgtgagaaagggaagaaatggatcacagaaaggtacgcatggccaaacccttc 598
Query: 433 cctgctatcct-ctcagcatcttaggacctcatacggagattctccttcatctaacctgc 491
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cctgcgatccttctcagcatcttaggacctcatacggagattctccttcatctaacctgc 538
Query: 492 tggttttgaagcttcatgctgctatgacattggctcgcaacacaggttgcttatgatgca 551
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 537 tggttttgaatcttcatgctgctataacattggctcgcaacacaggttgcttatgatgca 478
Query: 552 gttctagaggataggagttcaaagacaaggtgtgaggacggtgcctgctctgaag 606
|||||||||| ||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 477 gttctagaggctaggagttcaaaggcaaggtgtgaggacggtgcctgctgtgaag 423
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1013
Length adjustment: 10
Effective length of query: 596
Effective length of database: 1003
Effective search space: 597788
Effective search space used: 597788
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_m12.g1 MSMg01no526_m12.g1 CHROMAT_FILE:
MSMg01no526_m12.g1 PHD_FILE: MSMg01no526_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:49 2005
(474 letters)
>mm_chr18_81586332_81587209
Length = 878
Score = 866 bits (448), Expect = 0.0
Identities = 469/478 (98%), Gaps = 4/478 (0%)
Strand = Plus / Plus
Query: 1 gagatatcgtagttacgaaggcactcttgcttcctgagaatggacttctaaagaaagatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagatatcgtagttacgaaggcactcttgcttcctgagaatggacttctaaagaaagatg 260
Query: 61 tgtttccatgcagatgcaggaggcagggcaaggatccatgactggcgatggaggaaagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtttccatgcagatgcaggaggcagggcaaggatccatgactggcgatggaggaaagag 320
Query: 121 cctaaagttgctaatcccctcacgattctcccccatgtgttgctgttcccacacccaggc 180
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 cctaaagttgctaatcccctcacgattctcccccacatgttgctgttcccacacccaggc 380
Query: 181 ccaagataacaagggcaaagaattctggctt----tttttttttttgtagactttctaat 236
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 ccaagataacaagggcaaagaattctggcttaatttttttttttttgtagactttctaat 440
Query: 237 tacaaaagaaaccttcattgggtcatggagctatgtgctgaatttgagagtccacagaat 296
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 441 tacaaaagaaaccttcattgggccatggagctatgtgctgaatttgagagtccccagaat 500
Query: 297 ttgaagtattggggtgttctctttcccaggtgacctaccgtggggacaggacattcttgc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgaagtattggggtgttctctttcccaggtgacctaccgtggggacaggacattcttgc 560
Query: 357 attatattctgtattcatcagactgagagtgtcagcagaggtttttgtcaaggagaaggt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attatattctgtattcatcagactgagagtgtcagcagaggtttttgtcaaggagaaggt 620
Query: 417 ggccagctttgtgggttctgacagggcatggcgctcctctcaaacctgacagctttga 474
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggccaggtttgtgggttctgacagggcatggcgctcctctcaaacctgacagctttga 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 878
Length adjustment: 10
Effective length of query: 464
Effective length of database: 868
Effective search space: 402752
Effective search space used: 402752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
