BAC Information

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BAC

Clone NameMSMg01-527L23
Chromosome18 (Build37)
Map Location 16,020,322 - 16,020,730
singlet/doubletsinglet
Overlap genenone
Upstream geneTaf4b, LOC669965, Kctd1, EG622268, LOC100040151, Aqp4, LOC665473, Chst9, LOC670012, LOC100040551
Downstream geneEG225228, LOC100040202, Ppia-ps18_172.1, EG665509, Cdh2, LOC665519
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527L23.T7 (MSMg01no527_l23.b1)MSMg01-527L23.TJ (MSMg01no527_l23.g1)
ACCAG597027AG597028
length780777
length of high quality
(start - end)		649 (50 - 698)583 (78 - 660)
definitionCHROMAT_FILE: MSMg01no527_l23.b1 PHD_FILE: MSMg01no527_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:07 2005CHROMAT_FILE: MSMg01no527_l23.g1 PHD_FILE: MSMg01no527_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATAAAAATGAAGGCACACCATACCCAAACTTATGGGACACA
ACCAAAGCACTTCTAAAAGGAAAGTTCAGAGCACTAAGTGCCTTCACAAA
GAAATTACAATATTCTCATACTAGCAATTTAAGAGGACACCTGAAAGCTC
TAGATTAAAAGAGAAGTAAACATACCCCAGAGGCATAGACAGCAGGAAAT
AAACTCAGGGTTGAAATCAGTAAATTCAAAACAAAGAGAACAATACAAAG
AATAAAAAAAAAACCAAACCAAACAAACAAACAAAAAAAACAAAAAACAA
ACAAACAAACAAACAAACAAAAAACAAAACCAAGAGCTGGTTCTTTGAGA
AAATCAACAAGATAGAAAAACCTCTAGTCAGTCTAATTAAAAGGCAGAGA
TACAGTATCCAAATAGACAGAATCAGGAACGAAAAGGGGGGACATAACTA
CAGACACTGCAGAAATTCACAGATTCATTAAGTCTTCTTCAGAAACCTGT
ACTCCACAAAATTAAAAAATCTAAATGAAAGTTAAATCAAGATCAGGTAA
ACAATTTGAATATTTCTATAACCCCTAAGGAAATAGAAGCAGTCATTTAA
AGTCTCTCAACAACAACAACAACAACAAACAACAACAAAATCCCAGGTTT
AGATGGTTTCAGAATTTTACCAGACTTTNCAAGAAGAGCTAATACCAATA
CTCCTTAAACTATTCCACTAAATAAAAACA

NNAACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCCCACACCAATATAGAAGTT
ATATAAAATATAACTTCTGTTTTAAAAGGTCTGTGGCCTTTGCCACGAGT
TGTAGAATAATAGAGATTCAGACCTTTGAGGCCAGCAGATGTAAATATAA
TGGCTTGCTAATTACTAGCAGAATTTCAAAACACCTAATTAAACCACACA
TGCACATGTGAAGAAACATGAGCTGGGTATGGTTGTTGAATATGCATGGT
CCATTGGAAATGGCATTATTAGGAGGTGTAGCCTTATTGGAATAGGTGTG
GCCTTGTGGGAGGAAGTGCATTACTTTGTAAGTGGGATTGACTTAGTCTC
CTAGTCCTCAAGTTCTGCCCAGTGCAGAAAAGTCTCCTTCTGACTGCCTT
CAGATCAAGAAGTTGAACTCTCAGATATTCTAGCACCATGTCTGCCTGAA
TGCTGCCATGTTTCCGATCATCATGATAATGGACTTATGAAACTGTAAGC
CAGCCCCAGTTAAATGCTTTCCTTTAGAAATGTTACCCTGCTCATAGTGT
CTCTTTACAGCAATGAAACCCTAACTAACATACTAAGTAGGGTATCTACT
TTCCCTGTTTGTAAGAATTTGTATGGAAAGGCATTTAATTCCCTGCACAA
CTTNACTAGTACTTATCAGCTATGGTCTATTTAATACTCACTTTTGAAAA
ATATGAGACAAGTGAGGGAAAGAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_l23.g1 MSMg01no527_l23.g1 CHROMAT_FILE:
MSMg01no527_l23.g1 PHD_FILE: MSMg01no527_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:07 2005
         (583 letters)



>mm_chr18_16020322_16021305
          Length = 984

 Score =  675 bits (349), Expect = 0.0
 Identities = 389/409 (95%), Gaps = 14/409 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcccacaccaatatagaagttatataaaatataacttctgttttaaaaggtctgtggc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 409 tgtcccacaccaatatagaagttatataaaatataacttctgttttaaaatgtccgtggc 350

                                                                       
Query: 61  ctttgccacgagttgtagaataatagagattcagacctttgaggccagcagatgtaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ctttgccacgagttgtagaataatagagattcagacctttgaggccagcagatgtaaata 290

                                                                       
Query: 121 taatggcttgctaattactagcagaatttcaaaacacctaattaaa-ccacacatgcaca 179
           ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 289 taatggcttgctaattactagcagaatttcaaaacacctaactaaaaccacacatgcaca 230

                                                                       
Query: 180 tgtgaagaaacatgagctgggtatggttgttgaatatgcatggtccattggaaatggca- 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 229 tgtgaagaaacatgagctgggtatggttgttgaatatgcatggtccattggaaatggcag 170

                                                                       
Query: 239 --------ttat---taggaggtgtagccttattggaataggtgtggccttgtgggagga 287
                   |||    |||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct: 169 gtgtggccttaggaataggaggtgtggccttattggaataggtgtggccttgtgggaggg 110

                                                                       
Query: 288 agtgcattactttgtaagtgggattgacttagtctcctagtcctcaagttctgcccagtg 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 agtgcattactttgtaagtgggattgacttagtctcctagtcctcaagttctgcccagtg 50

                                                            
Query: 348 cagaaaagtctccttctgactgccttcagatcaagaagtt-gaactctc 395
           |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 49  cagaaaagtctccttctgactgccttcagatcaagaagtttgaactctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 984
Length adjustment: 10
Effective length of query: 573
Effective length of database: 974
Effective search space:   558102
Effective search space used:   558102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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