Query= MSMg01no528_c02.b1 MSMg01no528_c02.b1 CHROMAT_FILE:
MSMg01no528_c02.b1 PHD_FILE: MSMg01no528_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:39 2005
(389 letters)
>mm_chr18_42602360_42603148
Length = 789
Score = 716 bits (370), Expect = 0.0
Identities = 379/382 (99%)
Strand = Plus / Minus
Query: 8 ggaattcactctcttgaccaggctggcctcaaactcagagatacacctggctctgcctcc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ggaattcactctcttgaccaggctggcctcaaactcagagatacacctggctctgcctcc 631
Query: 68 ctagttctgggactaaaggtgtgtgccactactgtccagctacctttttttaatttcaag 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ctagttctgggactaaaggtgtgtgccactactgtccagctacctttttttaatttcaag 571
Query: 128 ttttgtatacatactcttttccagtcataaaaatgtatgatcattgcaaaaataatttag 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ttttgtatacatactcttttccagtcataaaaatgtatgatcattgcaaaaataatttag 511
Query: 188 acaattatgaaaaataaaatttgagccttccagactagttgatgtgcattcacacacatt 247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 510 acaattatgaaaaataaaatttgagccttccagactagttgatgtgcattcacacatatt 451
Query: 248 ccttgcccacagtgtcattttaaatacagtatcttttggagttaagaatatccatgagcc 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ccttgcccacagtgtcattttaaatacagtatcttttggagttaagaatatccatgagcc 391
Query: 308 atcttttcacctgccttgttttttgttatagcactctctggctgggtctgaaggtctcct 367
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 390 attttttcacctgccttgttttttgttatagcactctctggctggttctgaaggtctcct 331
Query: 368 tttgagatgtagcattccctgt 389
||||||||||||||||||||||
Sbjct: 330 tttgagatgtagcattccctgt 309
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space: 296400
Effective search space used: 296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_c02.g1 MSMg01no528_c02.g1 CHROMAT_FILE:
MSMg01no528_c02.g1 PHD_FILE: MSMg01no528_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:39 2005
(518 letters)
>mm_chr18_42427922_42428839
Length = 918
Score = 812 bits (420), Expect = 0.0
Identities = 497/554 (89%), Gaps = 52/554 (9%)
Strand = Plus / Plus
Query: 1 aggtcttgaggcttagctgttagagtcttttctggctgagccatctggacagccatgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aggtcttgaggcttagctgttagagtcttttctggctgagccatctggacagccatgact 240
Query: 61 cattttcagtttgtttgtttgggtttttttttttttattattatttgtttgttaaggttt 120
|||||||||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct: 241 cattttcagttt-ttt---------tttttttttttattatt----gtttgttaaggttt 286
Query: 121 gataatactctgtgtgtgtgtgtgtgagtccgtgtg------------------------ 156
|||||||||||||||||||||||||| || |||||
Sbjct: 287 gataatactctgtgtgtgtgtgtgtgtgt--gtgtgtgtgtgtgtgtgtgtgtgtgtttg 344
Query: 157 ------------agtgtatgccacctgtgtgtgcatgcctatggaggccagaagaggtct 204
|||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 345 tgtgtgtgtgtgagtgtatgccacctgtgtgtgcatacctatggaggccagaagaggtct 404
Query: 205 cctggagcagctgttataaatagttgtgagctgttcaatgtaggtgttggtcctctggaa 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cctggagcagctgttataaatagttgtgagctgttcaatgtaggtgttggtcctctggaa 464
Query: 265 tgggcttgggtggctggagtcttccggtgaaggggattgggacagctgtcaggaatgtca 324
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 465 tgggcttgggtggctggagtcttccggtgaaggggatggggacagctgtcaggaatgtca 524
Query: 325 gggatgcaggactgggctttttggtgccttctcggtttggaggctttcctagtggacagg 384
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gggatgcaggactggggtttttggtgccttctcggtttggaggctttcctagtggacagg 584
Query: 385 gttgaagagagaggaaggaatggaactgactggaccatgtacggaaaggggtcaagcctg 444
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 585 gttgaagagagaggaaggaatggaactgactggaccatgtccggaaaggggtcaagcctg 644
Query: 445 gaactccaccggaagaaatccttctgcctccacttcccaaatgctgggattacaggtgtg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gaactccaccggaagaaatccttctgcctccacttcccaaatgctgggattacaggtgtg 704
Query: 505 ggctacacatccag 518
||||||||||||||
Sbjct: 705 ggctacacatccag 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
