BAC Information

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BAC

Clone NameMSMg01-528H22
Chromosome18 (Build37)
Map Location 13,839,568 - 14,002,816
singlet/doubletdoublet
Overlap geneLOC100040358, Zfp521
Upstream gene2810439F02Rik, Cabyr, LOC665356, Osbpl1a, LOC435556, Impact, Hrh4, EG383354, LOC665379
Downstream geneLOC100040094, LOC100040103, LOC100040391, LOC382096, LOC100040129, EG623867, Ss18, LOC100040446, Psma8, Taf4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528H22.T7 (MSMg01no528_h22.b1)MSMg01-528H22.TJ (MSMg01no528_h22.g1)
ACCAG597597AG597598
length749740
length of high quality
(start - end)		584 (72 - 655)633 (79 - 711)
definitionCHROMAT_FILE: MSMg01no528_h22.b1 PHD_FILE: MSMg01no528_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:06 2005CHROMAT_FILE: MSMg01no528_h22.g1 PHD_FILE: MSMg01no528_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,839,568 - 13,840,151)(14,002,184 - 14,002,816)
sequence
TTTTTTACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCAGCCTATCCTCATTTTCATTTGCTCTGTCTGCTTTCT
GCTTGTGGTGGGAGATGTGCCCTCTGCTTCCTCTTCTGGCTGCCTTTGGC
CACGCCTTCCCCACTATTGTGGACTCTCCCTCTGGACCTGTAAGGGAGAA
TGAATTCTCCCTTCTGAAAGTCACCTTGGTCATGATGTTTGTCACAGGGA
TAGAGCAGTAACTAAACCAGCAATTAAGCTATTCCTCCAGAAAGTCAAAG
GAATATTCAACTGCTTGTGGTGGATACAATTATTATTTAAGCTTCTCAAG
GCAGGCAATTTGGTAAGGAGAGTCTCTTTAGAAAAGATTAGAAATGAAAG
ACACAGAGGAATGGGAGTTGTCTGAAGTTCAATGTAGAAAGGGCAGTGAC
ACTAAAACTGGCCTAAAGAGAGTCTGGAGTAAATACATCTCTAGTACATC
ACATCTATTTTGTTTCAAGTATTTCTAGCCCTTGATGAAATACTAGAAAA
AATGCTGCAGTATCTTGTAAGTTTACCTATCCCTCAAACTAAAGCTGGGC
GAAGTCACGTCAGAAGAGAAGGGATTTGGTATACACGACTGGTAAGTAGC
AGAGAANACTTTCAGGTTGATCTTTTCCCTTTATTATATTACATCAGGAG
CCTTAGGTACTTCCTGGATGAGAAAATGATATAAGATACGTTTATGTTG

AAAACACTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGACTGGGTTTCGTTGTGTG
GTGTGTATGCAGACTGTGACCTCCACCTTGGAACTCAAAATCCACGGGAC
CTTCCACATGCAGAAGACGGGGAATGGGTCCTCCGTGCAGACCACCGGGC
GTGGCCAGCACGTTCAGAAACTGTATAAGTGCGCATCTTGCCTCAAAGAG
TTCCGTTCCAAGCAAGATCTGGTGAAACTCGACATCAACGGCCTGCCATA
TGGTCTGTGTGCCGGCTGTGTGAATCTCAGTAAGAGCAGTAGCCCGGGCC
TCAGTCTCCCTCCTGGTGCCAGCAGGCCAGGCTTGGGCCAGAATGAGAGT
CTGAGCGCCATGGAAGGAAAAGGCAAGGCGGGGGGACTGAAGACGCGCTG
TTCAAGCTGCAATGTCAAGTTTGAGTCTGAAAGCGAACTGCAGAACCACA
TCCAGACGGTGCACCGGGAGCTTGTGCCAGACGCCAACAGCACACAGTTG
AAAACGCCCCAAGTGTCACCCATGCCCAGAATCAGTCCCTCCCAGTCCGA
TGAGGTAACTCGCCTTTTCTCAAGCTTGCTATTTCCCCCCTTTAAACACG
ACCCCCACTTTATAGTCAAGCTTGCCACGGCCTTATCTACTTTTGTCACA
TGCGCCAAGAGATGCGTAGTTTGAAATGCAATGTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_h22.b1 MSMg01no528_h22.b1 CHROMAT_FILE:
MSMg01no528_h22.b1 PHD_FILE: MSMg01no528_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:06 2005
         (584 letters)



>mm_chr18_13839368_13840351
          Length = 984

 Score = 1083 bits (560), Expect = 0.0
 Identities = 578/584 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcattttcatttgctctgtctgctttctgcttgtggtgggagatgtgccctctgcttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcattttcatttgctctgtctgctttctgcttgtggtgggagatgtgccctctgcttcc 260

                                                                       
Query: 61  tcttctggctgcctttggccacgccttccccactattgtggactctccctctggacctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttctggctgcctttggccacgccttccccactattgtggactctccctctggacctgt 320

                                                                       
Query: 121 aagggagaatgaattctcccttctgaaagtcaccttggtcatgatgtttgtcacagggat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 aagggagaatgaattctcccttctgaaagtcaccttggtcatgatgtttgtcacagtgat 380

                                                                       
Query: 181 agagcagtaactaaaccagcaattaagctattcctccagaaagtcaaaggaatattcaac 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 agagcagtaactaaaccagcaattaagctattcttccagaaagtcaaaggaatattcaac 440

                                                                       
Query: 241 tgcttgtggtggatacaattattatttaagcttctcaaggcaggcaatttggtaaggaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcttgtggtggatacaattattatttaagcttctcaaggcaggcaatttggtaaggaga 500

                                                                       
Query: 301 gtctctttagaaaagattagaaatgaaagacacagaggaatgggagttgtctgaagttca 360
           || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 gtgtctttagaaaagattagaaatgaaagacacagaggaatgggagtggtctgaagttca 560

                                                                       
Query: 361 atgtagaaagggcagtgacactaaaactggcctaaagagagtctggagtaaatacatctc 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 atgtagaaagggcagtgacactaaaactggcctaaggagagtctggagtaaatacatctc 620

                                                                       
Query: 421 tagtacatcacatctattttgtttcaagtatttctagcccttgatgaaatactagaaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagtacatcacatctattttgtttcaagtatttctagcccttgatgaaatactagaaaaa 680

                                                                       
Query: 481 atgctgcagtatcttgtaagtttacctatccctcaaactaaagctgggcgaagtcacgtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgctgcagtatcttgtaagtttacctatccctcaaactaaagctgggcgaagtcacgtc 740

                                                       
Query: 541 agaagagaagggatttggtatacacgactggtaagtagcagaga 584
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cgaagagaagggatttggtatacacgactggtaagtagcagaga 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no528_h22.g1 MSMg01no528_h22.g1 CHROMAT_FILE:
MSMg01no528_h22.g1 PHD_FILE: MSMg01no528_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:06 2005
         (633 letters)



>mm_chr18_14001984_14003016
          Length = 1033

 Score = 1224 bits (633), Expect = 0.0
 Identities = 633/633 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgactgggtttcgttgtgtggtgtgtatgcagactgtgacctccaccttggaactcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 cctgactgggtttcgttgtgtggtgtgtatgcagactgtgacctccaccttggaactcaa 774

                                                                       
Query: 61  aatccacgggaccttccacatgcagaagacggggaatgggtcctccgtgcagaccaccgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 aatccacgggaccttccacatgcagaagacggggaatgggtcctccgtgcagaccaccgg 714

                                                                       
Query: 121 gcgtggccagcacgttcagaaactgtataagtgcgcatcttgcctcaaagagttccgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gcgtggccagcacgttcagaaactgtataagtgcgcatcttgcctcaaagagttccgttc 654

                                                                       
Query: 181 caagcaagatctggtgaaactcgacatcaacggcctgccatatggtctgtgtgccggctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 caagcaagatctggtgaaactcgacatcaacggcctgccatatggtctgtgtgccggctg 594

                                                                       
Query: 241 tgtgaatctcagtaagagcagtagcccgggcctcagtctccctcctggtgccagcaggcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tgtgaatctcagtaagagcagtagcccgggcctcagtctccctcctggtgccagcaggcc 534

                                                                       
Query: 301 aggcttgggccagaatgagagtctgagcgccatggaaggaaaaggcaaggcggggggact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aggcttgggccagaatgagagtctgagcgccatggaaggaaaaggcaaggcggggggact 474

                                                                       
Query: 361 gaagacgcgctgttcaagctgcaatgtcaagtttgagtctgaaagcgaactgcagaacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gaagacgcgctgttcaagctgcaatgtcaagtttgagtctgaaagcgaactgcagaacca 414

                                                                       
Query: 421 catccagacggtgcaccgggagcttgtgccagacgccaacagcacacagttgaaaacgcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 catccagacggtgcaccgggagcttgtgccagacgccaacagcacacagttgaaaacgcc 354

                                                                       
Query: 481 ccaagtgtcacccatgcccagaatcagtccctcccagtccgatgaggtaactcgcctttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ccaagtgtcacccatgcccagaatcagtccctcccagtccgatgaggtaactcgcctttt 294

                                                                       
Query: 541 ctcaagcttgctatttcccccctttaaacacgacccccactttatagtcaagcttgccac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ctcaagcttgctatttcccccctttaaacacgacccccactttatagtcaagcttgccac 234

                                            
Query: 601 ggccttatctacttttgtcacatgcgccaagag 633
           |||||||||||||||||||||||||||||||||
Sbjct: 233 ggccttatctacttttgtcacatgcgccaagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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