Query= MSMg01no528_m15.b1 MSMg01no528_m15.b1 CHROMAT_FILE:
MSMg01no528_m15.b1 PHD_FILE: MSMg01no528_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:29 2005
(699 letters)
>mm_chr18_31135893_31136996
Length = 1104
Score = 1290 bits (667), Expect = 0.0
Identities = 688/699 (98%), Gaps = 8/699 (1%)
Strand = Plus / Plus
Query: 5 gaattcctgctcaacatttatgtctcccataaatctttcagattacaatctgtggttctg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgctcaacatttatgtctcccataaatctttcagattacaatctgtggttctg 264
Query: 65 agtggcatgacacacttgagatttctatttctgtgaattccaccaagacaacctatgttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtggcatgacacacttgagatttctatttctgtgaattccaccaagacaacctatgttg 324
Query: 125 gacatggtataacatcaacaaagcaaacaaaaagtgctatataaaattctggttacactc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacatggtataacatcaacaaagcaaacaaaaagtgctatataaaattctggttacactc 384
Query: 185 tcttcttcatgctttgacactctgatagagaataccaatcccaatgcccctccc-----c 239
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 385 tcttcttcatgctttgacactctgatagagaataccaatcccaatgccccccccccccac 444
Query: 240 acccaaaagaaaaatcttggagagaataaaagacaacaaatctgatgtataatcagctca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acccaaaagaaaaatcttggagagaataaaagacaacaaatctgatgtataatcagctca 504
Query: 300 cattgaggcatgaaaagatggatagggaaacattgaaaaactccttataataaattcata 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cattgaggcatgaaaagatggatagggaaacattgaaaaactccttataataaattcata 564
Query: 360 gaaattaaaataatagactttcataatcaatatggtaagactccaataaaagacagattg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaaattaaaataatagactttcataatcaatatggtaagactccaataaaagacagattg 624
Query: 420 cctaatctcttttttgtttgttttattttgtttataagttgagaaattaccttattaatc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctaatctcttttttgtttgttttattttgtttataagttgagaaattaccttattaatc 684
Query: 480 caagtttatatattatgtaataatataataatattatataataatataatagctcacttc 539
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 685 caagtttatatattatgtaataatataata---ttatataataatataatagctcacttc 741
Query: 540 caaaataaataaccactaagtttcctaaaagttgattttaatatgttacactaatttttt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 caaaataaataaccactaagtttcctaaaagttgattttaatatgttacactaatttttt 801
Query: 600 atctttttttcaattaggtattttcttcatttacatttcaaatgctatcccaaaagttcc 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 802 atctttttttcaattaggtattttcttcatttacatttcaaatgctatcccaaaagtttc 861
Query: 660 cccataccctaccccccactcccctacccacccactccc 698
| |||||||||||||||||||||||||||||||||||||
Sbjct: 862 cgcataccctaccccccactcccctacccacccactccc 900
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1104
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1094
Effective search space: 753766
Effective search space used: 753766
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_m15.g1 MSMg01no528_m15.g1 CHROMAT_FILE:
MSMg01no528_m15.g1 PHD_FILE: MSMg01no528_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:29 2005
(671 letters)
>mm_chr18_31306959_31308029
Length = 1071
Score = 1253 bits (648), Expect = 0.0
Identities = 666/672 (99%), Gaps = 2/672 (0%)
Strand = Plus / Minus
Query: 1 attgctttgctttttgttttccccagattaagggtgctaggatgcatctcagctaataaa 60
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 871 attgctttgctttttgttttccccagattaaggatggtaggatgcatctcagctaataaa 812
Query: 61 ataaaattaaagaacagtgttttattggcaaggagtcccagggaggatcagaagagtaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ataaaattaaagaacagtgttttattggcaaggagtcccagggaggatcagaagagtaat 752
Query: 121 tctttgagtgtaagtggatagttccaggccctggacaggacacttagcctagcaggaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 751 tctttgagtgtaagtggatagttccaggccctggacaggacacttagccaagcaggaaga 692
Query: 181 aagaaagtaaggggaaaataagaaaaagaagatgagagttacttgttaggaaagactgtt 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 691 aagaaagtaaggggaaaataagaaaaagaagatgagagttacttgttaagaaagactgtt 632
Query: 241 tcatgcagaggaacaatctttccaaagtttagagagaatccttttctatgtgcaatgtta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tcatgcagaggaacaatctttccaaagtttagagagaatccttttctatgtgcaatgtta 572
Query: 301 aggttcaagcccacgacctgctctaggacaaaagagaacactaagtttgcccaatcctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aggttcaagcccacgacctgctctaggacaaaagagaacactaagtttgcccaatcctgt 512
Query: 361 atccagactatttcgtgtctttctgaatctcagacagctttaggtccttgaacctctgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 atccagactatttcgtgtctttctgaatctcagacagctttaggtccttgaacctctgag 452
Query: 421 atcattttcttcctcctaatcatatcatctttcatcacactggggagataaagaggataa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 atcattttcttcctcctaatcatatcatctttcatcacactggggagataaagaggataa 392
Query: 481 tttcagtttgtgagaaacctaaaccaactgcataaaaatggtttatgaacgaaacaagtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tttcagtttgtgagaaacctaaaccaactgcataaaaatggtttatgaacgaaacaagtt 332
Query: 541 tcagaaacttgagggatttacatcagtctgcaagctgcaacat-ctacacgacagaacac 599
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 331 tcagaaacttgagggatttacatcagtctgcaagctgcaacatcct-cacgacagaacac 273
Query: 600 agcaaagccttcagttactacactgtaaggaagagtagctacaaccttgcaataagggga 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 agcaaagccttcagttactacactgtaaggaagagtagctacaaccttgcaataagggga 213
Query: 660 tactacttttca 671
||||||||||||
Sbjct: 212 tactacttttca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
