BAC Information

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BAC

Clone NameMSMg01-529I10
Chromosome18 (Build37)
Map Location 32,482,809 - 32,483,001
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3
Downstream geneBin1, Gypc, LOC100041160, LOC100041170, Tslp, Wdr36, Camk4, Stard4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529I10.T7 (MSMg01no529_i10.b1)MSMg01-529I10.TJ (MSMg01no529_i10.g1)
ACCAG598385AG598386
length766752
length of high quality
(start - end)
---193 (293 - 485)
definitionCHROMAT_FILE: MSMg01no529_i10.b1 PHD_FILE: MSMg01no529_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:32 2005CHROMAT_FILE: MSMg01no529_i10.g1 PHD_FILE: MSMg01no529_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTCTATATTTTGCTGCGCTATACGACTCACTATTTTCCGAGGATCCG
CGGAATTCCTGGAATTTTCTACCACTGCTATGGCCGACGGATACAACTTT
AGTCTTGCATATAGGTCACAATGTTGACTGTCTCACCACCAGATTGGGAT
TGGATCGTGCCCCCGCCTACCTCACATAATTGCAGTCCTCTCCTGTAGAT
CTACCGAACTCACTATGGTTGCTTTCAAAAAACCTTTCAGACCGTTTTAA
CAATGCCGCTCATACCTGAACTCAAAATTCTCACCTGCATCACTACCGAA
TCGTGGGATCTACACCTGGATTTATGCTCTTCATCCTTAAACTTCCCGAC
TTTGCGTATCTGAACAACCCCGATATTCCGCCTCACACCAATCTTAGTGA
CTACTGCTCTCCAGATCATGCGACACCCCATCGCGGTAACCTATGTCTGT
ATTCACTGACACTACTCCATTGCTGGTGGACTTGCGCGCTTGATTCAACC
CCCCCGTCTCCCCGTCTAGGGGATCCGCGTATCACCGTTTATGCTCTACC
GGACGATCCAGCACTACCTCTACCTGGTGATGTTGCCAGAACATGCCCCA
TCTTCTTCATAACGACTTTTTGCTCCCCTTTTCTGCATTAGCCCCCCTAT
TCTTGATCTTTCTGCCTGTTTGGATGGTAGCTCGACTCCCTCTCTCTTAT
ATGTACCGGTATACCAAACTATGTTGATATCTTACTGCTATATAGTAGCC
CCTGCCTCGCCTATTT
NCCACCATGATANXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAATAGAGG
GTGAACTATAGAAGGATTTCAAAAATATCGATGGGCATGTCACTCATGTA
CATGGATACATACACGTACACACCACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACATATGCTCAAACATTCTCACAA
TTAAAAAAGCAAAATGTCATTTCTTGATGATGTTATTATTGTATAAAAAT
GCACATATGTGCACTGGCTTGCCTGGGGTCAGCTGTCATAGTACATTGTT
ATCATTGGTCTTTTGAGCATTTGTTATTTGAGTTCAGAGAAAGGAGCTGC
AATGGAAATGTAGCCATTCTCTAGAGTGCTTGATTACATTCATTAAAAAG
AAACATCTCCCTTACTGTGAAACACCCCTAAGCTAGAATTTCAAGATAGT
GATTCCCATTAGGAATCTTATAGCTAGTGGCACAGCATCATGGATTGGGA
ATGCCTAAGTCTTATGTCAGAGTTCAGAAATAAGTTAGTATGACCATTAC
AGTACTGTTCTTGGTGTTGCTAAACTTTCCTGCCCAATGTTAGGGTATTC
AGACAAATAATAACATGAGACATTTTGATATTTGGAGTTTCATGTTTTAT
AAAAAGACATGTTTTGACAGGTCATGAATGCTACTTTGTCTCTACATTCA
TGGCAAGATCTAAAATCCTGGTAGAGAGACAACACATTATTTATAACATT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_i10.g1 MSMg01no529_i10.g1 CHROMAT_FILE:
MSMg01no529_i10.g1 PHD_FILE: MSMg01no529_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:32 2005
         (193 letters)



>mm_chr18_32482609_32483201
          Length = 593

 Score =  342 bits (177), Expect = 6e-99
 Identities = 189/193 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acattgttatcattggtcttttgagcatttgttatttgagttcagagaaaggagctgcaa 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 acattgttatcattggtcttttgagcatttattatttgagttcagagaaaggagctgcaa 260

                                                                       
Query: 61  tggaaatgtagccattctctagagtgcttgattacattcattaaaaagaaacatctccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaaatgtagccattctctagagtgcttgattacattcattaaaaagaaacatctccct 320

                                                                       
Query: 121 tactgtgaaacacccctaagctagaatttcaagatagtgattcccattaggaatcttata 180
           |||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactgtgaaagacttctaagctagaatttcaagatagtgattcccattaggaatcttata 380

                        
Query: 181 gctagtggcacag 193
           |||||||||||||
Sbjct: 381 gctagtggcacag 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)