Query= MSMg01no530_c12.b1 MSMg01no530_c12.b1 CHROMAT_FILE:
MSMg01no530_c12.b1 PHD_FILE: MSMg01no530_c12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:22 2005
(649 letters)
>mm_chr18_38956351_38957395
Length = 1045
Score = 1139 bits (589), Expect = 0.0
Identities = 634/651 (97%), Gaps = 8/651 (1%)
Strand = Plus / Plus
Query: 1 gaatctgtctcagagaataaggtggagaagagtagaggaagacactggacatcggctctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaatctgtctcagagaataaggtggagaagagtagaggaagacactggacatcggctctg 260
Query: 61 tcctccacatacacagacacacaggtaccagtgtagatacatgcacacacaagaaagtgt 120
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
Sbjct: 261 tcctccacatacacagacacacaggtaccaatgtagatacatgcacgcacaagaaagtat 320
Query: 121 aacctatcgtttactgtgatgtaagagagctgctctaagatacacagcttgtattaatat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacctatcgtttactgtgatgtaagagagctgctctaagatacacagcttgtattaatat 380
Query: 181 gtgaaaatgtaagtacatatacttgatagagaatgcaagatttaacaggtggggtggggc 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggaaatgtaagtacatatacttgatagagaatgcaagatttaacaggtggggtggggc 440
Query: 241 agggatggagacgcagaagtccctatgcatacataaaacaggtagattttcattggcaat 300
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 441 agggatggagacgcagaagtccctatg----cataaaacaggtagattttcgttggcaat 496
Query: 301 ttccattaagcatcttgaaaatacatgttcttggtaactctttgaaatgatcttgttcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttccattaagcatcttgaaaatacatgttcttggtaactctttgaaatgatcttgttcta 556
Query: 361 tttacttatagaacttcctgcttcttcctttaactcccccccccttcccc-tctcctctt 419
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 557 tttacttatagaacttcctgcttcttcctttaactcccccccc-ttccccctctcctctt 615
Query: 420 ggtaattctttttcttgcttctgtacctccagaactggaatagtgtcctagaagtggcag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggtaattctttttcttgcttctgtacctccagaactggaatagtgtcctagaagtggcag 675
Query: 480 atgctctattaatggcgccctctctgcattcatccaacaagtaagggatttgt-catctt 538
|| |||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 676 atactctattaatggcgtcctctctgcattcatccaacaagtaagggatttgttc-tctt 734
Query: 539 tccctttttttccttcttgcctgtacccctaaccctcagtgctggggatcagagccaggg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 735 tccctttttttccttcttgcctgtacccctaaccctcagtgctggggatcagagctaggg 794
Query: 599 ctatatgcatgttaagcaagcattctgccactaagttatatctccaaccct 649
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ctatatgcatgttaagcaagcattctgccactaagttatatctccaaccct 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1045
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1035
Effective search space: 661365
Effective search space used: 661365
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_c12.g1 MSMg01no530_c12.g1 CHROMAT_FILE:
MSMg01no530_c12.g1 PHD_FILE: MSMg01no530_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:22 2005
(602 letters)
>mm_chr18_39089575_39090576
Length = 1002
Score = 978 bits (506), Expect = 0.0
Identities = 564/602 (93%), Gaps = 32/602 (5%)
Strand = Plus / Minus
Query: 1 tcgacttttatacgagcactgacatgttcccaggtaaaccagttttttttgtttgtttgt 60
|||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 893 tcgacttttatacgagcactgacatgttcccaggtaaaccag-tttttttg--------- 844
Query: 61 tttttgttttttttgttttgttttgttttttgtttgtttgtttgtttgtttgtttgtttg 120
|||||||||||||||||| |||||||||||||||||||||
Sbjct: 843 -------tttttttgttttgttttg--ttttgtttgtttgtttgtttg------------ 805
Query: 121 ttttttggagaacctggaaaaagacaactcattcttgcagtacctaaagacacaaccctt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 804 -tttttggagaacctggaaaaagacaactcattcttgcagtacctaaagacaccatcctt 746
Query: 181 gtgtaatggggcacagacgcctgcagagggcagtgttggacaagcggttgactgctacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtgtaatggggcacagacgcctgcagagggcagtgttggacaagcggttgactgctacct 686
Query: 241 ctggctcaaagagtcaggacacttgggctcagaaggattaggagcccagtctgggcagct 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 685 ctggctcaaagagtcaggacacttgggctcagaaggattgggagcccagtctgggcagct 626
Query: 301 caggcctgccagctttctctagtgtttgcacagtgaattactcatagggaaatgtctcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caggcctgccagctttctctagtgtttgcacagtgaattactcatagggaaatgtctcca 566
Query: 361 aggacaagggacaccagagattccatcctgtacctagactcagcctgggacagttaacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggacaagggacaccagagattccatcctgtacctagactcagcctgggacagttaacac 506
Query: 421 acacaagctatgctctctcccttcaaaaaatgaacttgggaatgaaactgaaggttgaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acacaagctatgctctctcccttcaaaaaatgaacttgggaatgaaactgaaggttgaat 446
Query: 481 taaagggttggattcatccccaaagcgtttttgttggtgcccctcccccctttttttctt 540
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 taaagggtgggattcatccccaaagcttttttgttggtgcccctcccccctttttttctt 386
Query: 541 ttttttcattctgaaaagggcagtggaatctcaactagttctcgttgagaaggcagcaga 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttttcattctgaaaagggcactggaatctcaactagttctcgttgagaaggcagcaga 326
Query: 601 gc 602
||
Sbjct: 325 gc 324
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|