Query= MSMg01no530_j15.b1 MSMg01no530_j15.b1 CHROMAT_FILE:
MSMg01no530_j15.b1 PHD_FILE: MSMg01no530_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:59 2005
(717 letters)
>mm_chr18_28358873_28359989
Length = 1117
Score = 1288 bits (666), Expect = 0.0
Identities = 702/714 (98%), Gaps = 2/714 (0%)
Strand = Plus / Minus
Query: 5 gaattcaatcccggtagctaagtaatgcataggcgtaaagcattgtctatattttgggat 64
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 917 gaattcaatcccggaagctaagtaatgcataggcttaaagcattgtctatattttgggat 858
Query: 65 atggaagatccttgggtctggaaggggacacctactggccatcctgctggaaatctcctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 atggaagatccttgggtctggaaggggacacctactggccatcctgctggaaatctcctt 798
Query: 125 attttgtttaaagatcattccaggaaatgataagcatagtgctgtgttacagttaagatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 attttgtttaaagatcattccaggaaatgataagcatagtgctgtgttacagttaagatg 738
Query: 185 agcacacattaaatatttgatatgcctcatatgaaaggcaggtagataatatgatctgct 244
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 737 agcacacattaaatatttgatatgcctcatatgaaaggcaggtagatagtatgatctgct 678
Query: 245 caaagagagatccaaataaagcacaaatttctgctaaatcagaagtagatgcaaagtgtt 304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 677 caaagagagatccaaataaagcacacatttctgctaaatcagaagtagatgcaaagtgtt 618
Query: 305 ttacagaaagaaagactggaatgggaggtattagaatacatgcacatcatttttgcatag 364
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 617 ttacagaaagaaagactggaataggaggtattggaatacatgcacatcatttttgcataa 558
Query: 365 ttaatcatatagtatgtgtactatatcatgatatactacttgtcagaataaattaattag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttaatcatatagtatgtgtactatatcatgatatactacttgtcagaataaattaattag 498
Query: 425 caaaaaataatgaactgcaataggactaacagactctttaaactagaaactaatttatgg 484
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 497 caaaaaataatgaactgcaataggactaacagactctttaaattagaaactaatttatgg 438
Query: 485 tattttgttgttgcttgctgctttgatttcttttcttttaaagtaatggatttattaaag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tattttgttgttgcttgctgctttgatttcttttcttttaaagtaatggatttattaaag 378
Query: 545 caagaaaaaaaagtcattttctattcaacctgggtcaactgcattctagcactcaaataa 604
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 caagaaaaagaagtcattttctattcaacctgggtcaactgcattctagcactcaaataa 318
Query: 605 tgtaccttcaagcacctaatgactagcaccatgaatggtagtcattaggactgatatgtc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tgtaccttcaagcacctaatgactagcaccatgaatggtagtcattaggactgatatgtc 258
Query: 665 tagttggaca-caaatcaaattttccattttcggtgacataaagttgtatgtcc 717
|||||||||| ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 257 tagttggacaacaa-tcaaattttccattttcagtgacataaagttgtatgtcc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1117
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1107
Effective search space: 782649
Effective search space used: 782649
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no530_j15.g1 MSMg01no530_j15.g1 CHROMAT_FILE:
MSMg01no530_j15.g1 PHD_FILE: MSMg01no530_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:59 2005
(669 letters)
>mm_chr18_28183874_28184938
Length = 1065
Score = 1243 bits (643), Expect = 0.0
Identities = 661/669 (98%), Gaps = 4/669 (0%)
Strand = Plus / Plus
Query: 1 ctaaaatatttagttgtaaagactctgtattcctgacatctggtttgtgaggtgcagagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaaatatttagttgtaaagactctgtattcctgacatctggtttgtgaggtgcagagg 260
Query: 61 ctaggacagcactaactgccataagaaagcatccctgggcggtgtaccttttgatacaac 120
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 261 ctaggacagcactaactgccataagaaagcatccctgggtggtgtgccttttgatacaac 320
Query: 121 ctacagaagtccttgaatgtgggtacagaaagtagtgtagctgtgggcactatttgaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctacagaagtccttgaatgtgggtacagaaagtagtgtagctgtgggcactatttgaaga 380
Query: 181 atgtcttaagttgttttgacctttatcccatagtatttagtgtcacagccagtgcttggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtcttaagttgttttgacctttatcccatagtatttagtgtcacagccagtgcttggg 440
Query: 241 agaaccccaggagttctgtgacaagacataaataggctttcatataacaaacatcataat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 agaaccccaggagttctgtgacaagacataaataggctttcatataacaaacaccataat 500
Query: 301 catagtgggcttattgggattgagtttttaatggaagaacttcagtgttaagcaataata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catagtgggcttattgggattgagtttttaatggaagaacttcagtgttaagcaataata 560
Query: 361 agacaaaaggcttttgttgttgttttatttggttttctgtttttagatattttcctaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agacaaaaggcttttgttgttgttttatttggttttctgtttttagatattttcct---- 616
Query: 421 tttaatagcttcttaagcaaaaactccttataagtgattcctgagcacactaatactagc 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tttaatagcttctaaagcaaaaactccttataagtgattcctgagcacactaatactagc 676
Query: 481 atgccttgacaacagtacataagtcagtcatgaaggtgactgtagaggctcagcaaaaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atgccttgacaacagtacataagtcagtcatgaaggtgactgtagaggctcagcaaaaga 736
Query: 541 cccctgattcttcaggttcttcaacatcatccagatgtttccagactcggaccgataaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cccctgattcttcaggttcttcaacatcatccagatgtttccagactcggaccgataaat 796
Query: 601 caaactttgcctcagaaaggttctgactggttttacaaaacagtctcccaaattttaaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 caaactttgcctcagaaaggttctgactggttttacaaaacagtctcccaaattttaaaa 856
Query: 661 gttctgaat 669
|||||||||
Sbjct: 857 gttctgaat 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1065
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1055
Effective search space: 695245
Effective search space used: 695245
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
